PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289957.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 354aa    MW: 38576.6 Da    PI: 7.4269
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.81.3e-131152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+s r  ++ kRr g+lKK +EL +LC+++++v+i+ ++ 
  XP_021289957.1 11 IVNNSARRASLRKRRLGLLKKVSELTTLCGVDACVLIYCPDE 52
                    779999********************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MARKKAKLAW IVNNSARRAS LRKRRLGLLK KVSELTTLCG VDACVLIYCP DETEPVVWPS  60
HDVMQQLLAR FQSMPELERQ RKMMNQDTYL RENGTKTQEQ LTKCQRRNKE VEMTHLMHQI  120
NQGKELDELN LSELHGLIWF VEEKIKDIRK RIEFFQLVPF APAGFPHHPH LPLPPQGPPI  180
NETAQIGSGS AGHGGSGRTP TEPSLWDPWF IDMMNHNEHQ SAGSSSIRSD VGFPYHPFAG  240
SAADDPGLPG HSFAGSFSGA ADTGLPPMSF GQQGAGVSDM GLSRASSIGG SSFGPFGGDI  300
GLGLHPFGGD VRRSSAVSEL GLPRFQYFGG SSSGAGSDIG LPFDGKTWPS NFSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKAKLAWIVNNSARRASLRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-32M-type_MADS family protein