PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289952.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 305aa    MW: 33159.6 Da    PI: 8.9805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-144589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_021289952.1 45 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MNSSSSSPNP PLPPAPPPPQ SSTSANAADG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL  60
QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGTIA HVPPPRPKRK AAHPYPQKAS  120
KNVLVSLQAS MAYPSSINTI APGYAPWDEA SLLVNTAPSK IMPPQDEFTR LQGAEADIGS  180
KGVARISNGG VSSIGSLSRT ISSSDMPNQG KQAPMLHGIP DFAEVYSFIG SIFDPDTQGH  240
VQKLKEMDPI NFETVLLLMR NLTVNLCSPD FEPIRKVLSS YDVSTTTVGL GTGIIPQSQT  300
NDISC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-119MYB_related family protein