PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289947.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 354aa MW: 39028.5 Da PI: 9.0556

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50	3.9e-16	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r +++ kRr g+lKK +EL +LC+++++vii+s++ XP_021289947.1 11 IVNDSARRTSLKKRRLGLLKKVSELTTLCGINACVIIYSPDE 52 779************************************986 PP
2	K-box	16.7	3.1e-07	91	151	11	68
K-box 11 eakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 +k + q++l+k +++++++q + G++L++L+l eLq L +e+ +k+iR++ XP_021289947.1 91 REKVTKAQEQLTKCQRRNKEIQmthFMHQITEGKGLNELNLSELQGLTWFVEEKIKEIRKR 151 566788999***********4332345567*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MARKKVKLAW IVNDSARRTS LKKRRLGLLK KVSELTTLCG INACVIIYSP DETEPVVWPS 60 HDVVEQQLAR FQSMPELERQ KKMMNQETYL REKVTKAQEQ LTKCQRRNKE IQMTHFMHQI 120 TEGKGLNELN LSELQGLTWF VEEKIKEIRK RFEFSQQVSF APAGAPPHPH LPLPPQGPAV 180 NETARIGCGS ACHGGDGRTS IEPLLWDQWF IDMMNRNELK SAGSSCIRSD TGLPYHPFAG 240 IAADDPGLPR HSFAAGSSGS ADMGLPHMSF RHQGAGAGDM WLSRGRSVGR SSFVPFGIDI 300 GLGLRPSGGE VESSPARSNL GLPPLLRFEG SSSGVGSDIG LPFDGKTWPN NFSP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MARKKVKLAW IVNDSARRTS LKKRRLGLLK KVSELTTLCG INACVIIYSP DETEPVVWPS  60
HDVVEQQLAR FQSMPELERQ KKMMNQETYL REKVTKAQEQ LTKCQRRNKE IQMTHFMHQI  120
TEGKGLNELN LSELQGLTWF VEEKIKEIRK RFEFSQQVSF APAGAPPHPH LPLPPQGPAV  180
NETARIGCGS ACHGGDGRTS IEPLLWDQWF IDMMNRNELK SAGSSCIRSD TGLPYHPFAG  240
IAADDPGLPR HSFAAGSSGS ADMGLPHMSF RHQGAGAGDM WLSRGRSVGR SSFVPFGIDI  300
GLGLRPSGGE VESSPARSNL GLPPLLRFEG SSSGVGSDIG LPFDGKTWPN NFSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLAWIVNDSARRTSLKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-31	M-type_MADS family protein