PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289897.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 465aa MW: 52423.4 Da PI: 4.7349

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.8	1.9e-34	60	151	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d +l+ +isw +g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F++g+++ll++ XP_021289897.1 60 FLSKTFDLVDDTSLDPIISWGPTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGRRHLLKN 145 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks XP_021289897.1 146 IQRRKS 151 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MNPEDEKRSP NSPPNPPQTL PFPSPLMELE TSGTSAPAET EFIGVPRPLE ILQGNPVPPF 60 LSKTFDLVDD TSLDPIISWG PTGESFVVWD PLEFSRLILP RNFKHNNFSS FVRQLNTYGF 120 RKIDTDKWEF ANEAFQRGRR HLLKNIQRRK SPQSQQVGNY FRASTEAERS GLEGEIERLR 180 KEKSVMMQEV VDLQQRHQGT ARDVEVVNRR LQAAEKRQKQ MVSFLAKLFQ NPAFLARLKQ 240 KKEQGEFGSL RMRRKFVRHQ QLELVNSEPP VEGQLAEYKP DWRNLAISSL ATDSNPISVE 300 QSPDYLPEVA DGYIRTLELV GEGTSALGSK DSHFKGKNII GSEQEVNPGY LVSFPEELVK 360 HKSSSEFSSS IGEIVAKQED IWSMGFDATA GMSSSSNELW GNLESYDIPE LGVTGELSDV 420 WDLGFVQTAE DSGTDKWPTE ESPCDNPETE SLAGQPEDNR SKKTD

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MNPEDEKRSP NSPPNPPQTL PFPSPLMELE TSGTSAPAET EFIGVPRPLE ILQGNPVPPF  60
LSKTFDLVDD TSLDPIISWG PTGESFVVWD PLEFSRLILP RNFKHNNFSS FVRQLNTYGF  120
RKIDTDKWEF ANEAFQRGRR HLLKNIQRRK SPQSQQVGNY FRASTEAERS GLEGEIERLR  180
KEKSVMMQEV VDLQQRHQGT ARDVEVVNRR LQAAEKRQKQ MVSFLAKLFQ NPAFLARLKQ  240
KKEQGEFGSL RMRRKFVRHQ QLELVNSEPP VEGQLAEYKP DWRNLAISSL ATDSNPISVE  300
QSPDYLPEVA DGYIRTLELV GEGTSALGSK DSHFKGKNII GSEQEVNPGY LVSFPEELVK  360
HKSSSEFSSS IGEIVAKQED IWSMGFDATA GMSSSSNELW GNLESYDIPE LGVTGELSDV  420
WDLGFVQTAE DSGTDKWPTE ESPCDNPETE SLAGQPEDNR SKKTD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	244	ARLKQKKEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	1e-116	HSF family protein