PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289896.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 492aa MW: 55265.6 Da PI: 4.5351

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.7	2.1e-34	60	151	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d +l+ +isw +g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F++g+++ll++ XP_021289896.1 60 FLSKTFDLVDDTSLDPIISWGPTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGRRHLLKN 145 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks XP_021289896.1 146 IQRRKS 151 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MNPEDEKRSP NSPPNPPQTL PFPSPLMELE TSGTSAPAET EFIGVPRPLE ILQGNPVPPF 60 LSKTFDLVDD TSLDPIISWG PTGESFVVWD PLEFSRLILP RNFKHNNFSS FVRQLNTYGF 120 RKIDTDKWEF ANEAFQRGRR HLLKNIQRRK SPQSQQVGNY FRASTEAERS GLEGEIERLR 180 KEKSVMMQEV VDLQQRHQGT ARDVEVVNRR LQAAEKRQKQ MVSFLAKLFQ NPAFLARLKQ 240 KKEQGEFGSL RMRRKFVRHQ QLELVNSEPP VEGQLAEYKP DWRNLAISSL ATDSNPISVE 300 QSPDYLPEGI EGIDLGAECL PFQIDNEIVV SDELAVADGY IRTLELVGEG TSALGSKDSH 360 FKGKNIIGSE QEVNPGYLVS FPEELVKHKS SSEFSSSIGE IVAKQEDIWS MGFDATAGMS 420 SSSNELWGNL ESYDIPELGV TGELSDVWDL GFVQTAEDSG TDKWPTEESP CDNPETESLA 480 GQPEDNRSKK TD

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MNPEDEKRSP NSPPNPPQTL PFPSPLMELE TSGTSAPAET EFIGVPRPLE ILQGNPVPPF  60
LSKTFDLVDD TSLDPIISWG PTGESFVVWD PLEFSRLILP RNFKHNNFSS FVRQLNTYGF  120
RKIDTDKWEF ANEAFQRGRR HLLKNIQRRK SPQSQQVGNY FRASTEAERS GLEGEIERLR  180
KEKSVMMQEV VDLQQRHQGT ARDVEVVNRR LQAAEKRQKQ MVSFLAKLFQ NPAFLARLKQ  240
KKEQGEFGSL RMRRKFVRHQ QLELVNSEPP VEGQLAEYKP DWRNLAISSL ATDSNPISVE  300
QSPDYLPEGI EGIDLGAECL PFQIDNEIVV SDELAVADGY IRTLELVGEG TSALGSKDSH  360
FKGKNIIGSE QEVNPGYLVS FPEELVKHKS SSEFSSSIGE IVAKQEDIWS MGFDATAGMS  420
SSSNELWGNL ESYDIPELGV TGELSDVWDL GFVQTAEDSG TDKWPTEESP CDNPETESLA  480
GQPEDNRSKK TD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	244	ARLKQKKEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	1e-110	HSF family protein