PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289836.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 477aa MW: 52637.2 Da PI: 7.6551

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.3e-17	157	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021289836.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MLDLNLSVIL GGDDSVGMAG EALPDFSGYN NKQMESSGSF DSSIVNADTT TTTGDDDSSS 60 NAAAADTFAY SFGILKTTEE TENNHRTIPL FPVNVEGGGG KSTGSSQKEW LDLGKSREAS 120 EQHCGAAERR LVAQQQQQVQ LKPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVTDYEE DIKQMSNFTK EEFVHILRRQ 240 STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN FEASTYEGEL 300 ISGSENGGRN QGLDLNLGIA PPYTSDPLKE NNNSDNFAFQ RGWDGLPVET GARIDNSVPA 360 TMRVQPSLGQ EMAFKHLQNW NGANPSFFPV YRERAIEKRM EGDYAPNWAW QFQGLYGGAN 420 PVPLFPTAAS SGFSSSTITT PLAAAGQLRI PNTTFLHHHH FPPAITNPNI SHFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MLDLNLSVIL GGDDSVGMAG EALPDFSGYN NKQMESSGSF DSSIVNADTT TTTGDDDSSS  60
NAAAADTFAY SFGILKTTEE TENNHRTIPL FPVNVEGGGG KSTGSSQKEW LDLGKSREAS  120
EQHCGAAERR LVAQQQQQVQ LKPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVTDYEE DIKQMSNFTK EEFVHILRRQ  240
STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN FEASTYEGEL  300
ISGSENGGRN QGLDLNLGIA PPYTSDPLKE NNNSDNFAFQ RGWDGLPVET GARIDNSVPA  360
TMRVQPSLGQ EMAFKHLQNW NGANPSFFPV YRERAIEKRM EGDYAPNWAW QFQGLYGGAN  420
PVPLFPTAAS SGFSSSTITT PLAAAGQLRI PNTTFLHHHH FPPAITNPNI SHFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	9e-91	AP2 family protein