PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289835.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 492aa MW: 54379.2 Da PI: 7.1424

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.5e-17	157	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021289835.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*****************......55**********************997 PP
2	AP2	42	2.3e-13	249	299	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_021289835.1 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 299 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MLDLNLSVIL GGDDSVGMAG EALPDFSGYN NKQMESSGSF DSSIVNADTT TTTGDDDSSS 60 NAAAADTFAY SFGILKTTEE TENNHRTIPL FPVNVEGGGG KSTGSSQKEW LDLGKSREAS 120 EQHCGAAERR LVAQQQQQVQ LKPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVTDYEE DIKQMSNFTK EEFVHILRRQ 240 STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKCNGR 300 EAVTNFEAST YEGELISGSE NGGRNQGLDL NLGIAPPYTS DPLKENNNSD NFAFQRGWDG 360 LPVETGARID NSVPATMRVQ PSLGQEMAFK HLQNWNGANP SFFPVYRERA IEKRMEGDYA 420 PNWAWQFQGL YGGANPVPLF PTAASSGFSS STITTPLAAA GQLRIPNTTF LHHHHFPPAI 480 TNPNISHFYC RS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MLDLNLSVIL GGDDSVGMAG EALPDFSGYN NKQMESSGSF DSSIVNADTT TTTGDDDSSS  60
NAAAADTFAY SFGILKTTEE TENNHRTIPL FPVNVEGGGG KSTGSSQKEW LDLGKSREAS  120
EQHCGAAERR LVAQQQQQVQ LKPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVTDYEE DIKQMSNFTK EEFVHILRRQ  240
STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKCNGR  300
EAVTNFEAST YEGELISGSE NGGRNQGLDL NLGIAPPYTS DPLKENNNSD NFAFQRGWDG  360
LPVETGARID NSVPATMRVQ PSLGQEMAFK HLQNWNGANP SFFPVYRERA IEKRMEGDYA  420
PNWAWQFQGL YGGANPVPLF PTAASSGFSS STITTPLAAA GQLRIPNTTF LHHHHFPPAI  480
TNPNISHFYC RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-102	AP2 family protein