PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289811.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 309aa    MW: 34977.1 Da    PI: 9.1827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-092974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + + +a +++ ++   +W ++a++++ g+t  +++  ++ 
   XP_021289811.1 29 KWTPEENKCFENALALYDKDtpdRWFKVAAMIP-GKTVGDVIKQYRE 74
                     8********************************.******9999986 PP
2Myb_DNA-binding47.25.1e-15137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_021289811.1 137 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MMNRGLEVLS PASYLQTSNW LFQESRGTKW TPEENKCFEN ALALYDKDTP DRWFKVAAMI  60
PGKTVGDVIK QYRELEEDVS DIEAGLIPIP GYSSDSFTLE WVNDSQGFDG FRQYYTPGGK  120
RGAGTRPSDQ ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLTGGK DKRRSSIHDI TTVNVPDTPS SSPDHSKPLS PNNSAAVMQA QQQPKVAGVT  240
KELFEWKQQN EGAVMVFNQT SGNAFLSPFC GISSYGPKVD EQNFLRGTLP RSQFGSYNTL  300
FQMQSMQRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-139MYB family protein