PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289416.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 403aa MW: 44067.3 Da PI: 6.5154

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	55	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l d+v ++G ++W++Iar + gR++k+c++rw++ XP_021289416.1 55 KGPWSPEEDAILSDLVSKFGARNWSLIARGIA-GRSGKSCRLRWFNQ 100 79****************************.*********996 PP
2	Myb_DNA-binding	55	1.8e-17	107	151	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ ++ a++ +G++ W+ Iar ++ gRt++ +k++w++ XP_021289416.1 107 RKPFTDEEDQMIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 151 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
METEMEVVEN GNDATVNEIN VPSALEGGEA AEGGGDGGSR GGSAIGGRTR KERVKGPWSP 60 EEDAILSDLV SKFGARNWSL IARGIAGRSG KSCRLRWFNQ LDPAVKRKPF TDEEDQMIIS 120 AHAVHGNKWA VIARLLPGRT DNAIKNHWNS TLRRRCMELG RIKSESEHMA EDASLDKTKA 180 SSEETLSCAE DSSFRSTEGK DVSSLEKLDT QLKGKSLTGI QSSHESIEPP TLFRPVARVS 240 AFNVYNHVDR PEFVSPCSRP VLMQGPLIQT SKPDVGICKL HEGVYKEGIV PLQCGLGCCG 300 TQNVRNGNTN SLLGPEFVEF SEPPSFPNYE LAAIASDISN LAWLKSGLEN NSVRPMDDAA 360 GGTTSHRSQV YTGHFEKPRM SDRFHIEERN NKLTGRMTNL LST

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

METEMEVVEN GNDATVNEIN VPSALEGGEA AEGGGDGGSR GGSAIGGRTR KERVKGPWSP  60
EEDAILSDLV SKFGARNWSL IARGIAGRSG KSCRLRWFNQ LDPAVKRKPF TDEEDQMIIS  120
AHAVHGNKWA VIARLLPGRT DNAIKNHWNS TLRRRCMELG RIKSESEHMA EDASLDKTKA  180
SSEETLSCAE DSSFRSTEGK DVSSLEKLDT QLKGKSLTGI QSSHESIEPP TLFRPVARVS  240
AFNVYNHVDR PEFVSPCSRP VLMQGPLIQT SKPDVGICKL HEGVYKEGIV PLQCGLGCCG  300
TQNVRNGNTN SLLGPEFVEF SEPPSFPNYE LAAIASDISN LAWLKSGLEN NSVRPMDDAA  360
GGTTSHRSQV YTGHFEKPRM SDRFHIEERN NKLTGRMTNL LST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-107	MYB family protein