PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289188.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 574aa MW: 65657.6 Da PI: 6.5891

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.6	9.1e-30	127	212	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_021289188.1 127 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 212 8***********************************999*************************98..55667*****85 PP
2	trihelix	66.9	4.2e-21	422	503	2	83
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W+++e+ Li++r++me+r+ +g++++ lWee++ km+ gf rs+ +Ckekw++++ + k+ke++kkr +e+s+ c y++ XP_021289188.1 422 WQESEISRLIQLRTSMESRFHqEGCSEEILWEEIATKMACLGFDRSALMCKEKWDSISAYLMKTKESNKKR-KENSRGCGYYQ 503 ******************9459********************************************8.78888999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MEMEDHHHHQ YGMADLRQLM NGRPTHFQGI PQAPELFSSG HRNLPPPQPH HHQHHPHTFE 60 MMEMVGRQVG HELMPRGLHH DFPADSTANN ATPTAAAVAV TSASTPSASC GFDGEATAFG 120 GDGGTGRWPR QETLTLLEIR SRLDPKFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK 180 FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNS VSGPETQLIG NNFRFHGTPN 240 SNTQANQDVY HSQKLCDSLS LSNSSDFDTS SSDDNDLSTA GPMENDSSEK RKKKRGSRSW 300 KAKIKEFIDS QMRKLMERQE AWLEKLTKTL EQKEQERVLR EEEWRKEETA RIDREHKFWA 360 KERAWIEARD AALMEALQNL TGKQLKVTSP EELMATEIQN HSENQNENGS ETINNTVKAD 420 GWQESEISRL IQLRTSMESR FHQEGCSEEI LWEEIATKMA CLGFDRSALM CKEKWDSISA 480 YLMKTKESNK KRKENSRGCG YYQNNETLYS QGRAYCEINE QGSETVRLQT NDGSSPSNSN 540 AGNAVNDSCF RFLMADGENL WENYGLKFSK GENQ

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MEMEDHHHHQ YGMADLRQLM NGRPTHFQGI PQAPELFSSG HRNLPPPQPH HHQHHPHTFE  60
MMEMVGRQVG HELMPRGLHH DFPADSTANN ATPTAAAVAV TSASTPSASC GFDGEATAFG  120
GDGGTGRWPR QETLTLLEIR SRLDPKFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK  180
FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNS VSGPETQLIG NNFRFHGTPN  240
SNTQANQDVY HSQKLCDSLS LSNSSDFDTS SSDDNDLSTA GPMENDSSEK RKKKRGSRSW  300
KAKIKEFIDS QMRKLMERQE AWLEKLTKTL EQKEQERVLR EEEWRKEETA RIDREHKFWA  360
KERAWIEARD AALMEALQNL TGKQLKVTSP EELMATEIQN HSENQNENGS ETINNTVKAD  420
GWQESEISRL IQLRTSMESR FHQEGCSEEI LWEEIATKMA CLGFDRSALM CKEKWDSISA  480
YLMKTKESNK KRKENSRGCG YYQNNETLYS QGRAYCEINE QGSETVRLQT NDGSSPSNSN  540
AGNAVNDSCF RFLMADGENL WENYGLKFSK GENQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-142	Trihelix family protein