PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289129.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 555aa MW: 60765.3 Da PI: 8.2457

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_021289129.1 59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	60.3	4.3e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_021289129.1 111 KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	53.5	5.4e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_021289129.1 163 KDAWTLEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MAELTMVERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRR TTGPIRRAKG 60 GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVSRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGAKDMNSSA 240 ATKSLLVCSK KESDSTAQTS SGTTDICKPE EDGKDQLESS APVQGMAASS SVIPNESADT 300 ESAEGKPQSF DANPCCCNSE PRAKFESRGI SSAIVEDKVV ETQVWHDSPT YGSLCYEPPR 360 LQGVTSLDSD NLNNKGMQPE WTSSPITSPI SFFTPPSVKG SGLSAHSPES ILRFAAKSFP 420 NTPSIFRKRK TGAQSLMLPK MGRMEETVKN RIQLSGEQER TENSLEQAPL RDGSSCESPA 480 CLGTSSVGPN CIAFNASPPY RLRSKRTAVF KSVERQLEFT FDKERHEDNA KSSDLSMNGS 540 SPIEDCLNAT KMGVT

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MAELTMVERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVSRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGAKDMNSSA  240
ATKSLLVCSK KESDSTAQTS SGTTDICKPE EDGKDQLESS APVQGMAASS SVIPNESADT  300
ESAEGKPQSF DANPCCCNSE PRAKFESRGI SSAIVEDKVV ETQVWHDSPT YGSLCYEPPR  360
LQGVTSLDSD NLNNKGMQPE WTSSPITSPI SFFTPPSVKG SGLSAHSPES ILRFAAKSFP  420
NTPSIFRKRK TGAQSLMLPK MGRMEETVKN RIQLSGEQER TENSLEQAPL RDGSSCESPA  480
CLGTSSVGPN CIAFNASPPY RLRSKRTAVF KSVERQLEFT FDKERHEDNA KSSDLSMNGS  540
SPIEDCLNAT KMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-157	MYB family protein