PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289063.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 484aa MW: 54758.8 Da PI: 6.2384

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2e-24	112	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ ++ XP_021289063.1 112 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQSL 206 7************99888876433677788999999******************************************559****** PP trihelix 82 fdqle 86 +d ++ XP_021289063.1 207 LDTMD 211 *9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
METNGLPGGM FSGIGSGMLG LEMPLHPQQQ QQPQNPQSAQ NPHQLHHHPQ MVAYSHHETD 60 QSQHQQSVKQ GYPFASKTKQ LSPLSDEDEP GFTPDDGAAD AKRKISPWQR MKWTDSMVRL 120 LIMAVYYIGD EAGSEGNDPA GKKKAGGLLQ KKGKWKSVSR AMMEKGFYVS PQQCEDKFND 180 LNKRYKRVND ILGRGTACKV VENQSLLDTM DLSPKMKEEV RKLLNSKHLF FREMCAYHNS 240 CGHGATAGAS GANHSPEVAT ETSQIQHQQA SNQQRCLHSS DAAQIAGNSG RMDPEASKLA 300 KVGSEEEDDD EDDDSDDDED EDDEEAMDGH SRGHNGHGQE DDEDNDEKSS RKRPRKGAFA 360 MSLSPLMQQL SCEVVNVIQD GSKSAWEKKH WMKMRLMQLE EQQVSYQYQA FELEKQRLKW 420 VKFSGKKERE MEKAKLENER RRLENERMVL LVRQKELEFV DVQHQHQPQQ HSSSKRGDPS 480 TITG

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

METNGLPGGM FSGIGSGMLG LEMPLHPQQQ QQPQNPQSAQ NPHQLHHHPQ MVAYSHHETD  60
QSQHQQSVKQ GYPFASKTKQ LSPLSDEDEP GFTPDDGAAD AKRKISPWQR MKWTDSMVRL  120
LIMAVYYIGD EAGSEGNDPA GKKKAGGLLQ KKGKWKSVSR AMMEKGFYVS PQQCEDKFND  180
LNKRYKRVND ILGRGTACKV VENQSLLDTM DLSPKMKEEV RKLLNSKHLF FREMCAYHNS  240
CGHGATAGAS GANHSPEVAT ETSQIQHQQA SNQQRCLHSS DAAQIAGNSG RMDPEASKLA  300
KVGSEEEDDD EDDDSDDDED EDDEEAMDGH SRGHNGHGQE DDEDNDEKSS RKRPRKGAFA  360
MSLSPLMQQL SCEVVNVIQD GSKSAWEKKH WMKMRLMQLE EQQVSYQYQA FELEKQRLKW  420
VKFSGKKERE MEKAKLENER RRLENERMVL LVRQKELEFV DVQHQHQPQQ HSSSKRGDPS  480
TITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-91	Trihelix family protein