PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289004.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ERF

Protein Properties

Length: 593aa MW: 66776.8 Da PI: 4.6642

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.2	1.5e-16	85	143	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr p ng k r +lg+f a eAa a+++a+++++g XP_021289004.1 85 CKYRGVRQRI-WGKWVAEIRQPI-NGvrvgnKGkNRLWLGTFSNAIEAAIAYDKAARAMYG 143 79***998.******74.5555554346**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MGSPMIRNSS SSVMEDGVRA RNKKPRRRRN GRESVEDTIE KWKKYNNDQL QLGEEVGLQK 60 VCKVPAKGSK KGCMQGKGGP ENSRCKYRGV RQRIWGKWVA EIRQPINGVR VGNKGKNRLW 120 LGTFSNAIEA AIAYDKAARA MYGPYARLNF PDHSEESAVH NSNKESASST TETCSTESTS 180 ISNSFAEKAK ELSIHYSSPA EEPELHVVEE SKVRLVDKPM EKRDCSQVYI NEEAGCIAED 240 TATETRGTEC NSRNDRKPYK EQGVEVETSK EAIDHELTEL MRLHNDTNDY LHNDLKDEGC 300 QLSINYLDSD DYNLQTPFKK KEMESEVELS QNILSSAYSG FNFRPNYMDN EEQDAGISTI 360 DLEPSNDVKV EMPVTRENWK CELAGSIESI DYNFFSGKDD NLESELTDGN LGLGFCYKPS 420 TEMKAEAPVL MEEVEVEPRG FTDFNSYKGF GNTYDHMPHE PTGLICQQEM NTTTPTDFKA 480 LTPVNYGGFN SFKNKLDFMH SWPAEAITDG KPFALIRNDN CGLRPKESYN SDQLESSSTN 540 YPERGGLQDP IAEAQGGFNQ YETGSGEDCK LGFSRLDVDL DLVTDLWFPE HGF

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MGSPMIRNSS SSVMEDGVRA RNKKPRRRRN GRESVEDTIE KWKKYNNDQL QLGEEVGLQK  60
VCKVPAKGSK KGCMQGKGGP ENSRCKYRGV RQRIWGKWVA EIRQPINGVR VGNKGKNRLW  120
LGTFSNAIEA AIAYDKAARA MYGPYARLNF PDHSEESAVH NSNKESASST TETCSTESTS  180
ISNSFAEKAK ELSIHYSSPA EEPELHVVEE SKVRLVDKPM EKRDCSQVYI NEEAGCIAED  240
TATETRGTEC NSRNDRKPYK EQGVEVETSK EAIDHELTEL MRLHNDTNDY LHNDLKDEGC  300
QLSINYLDSD DYNLQTPFKK KEMESEVELS QNILSSAYSG FNFRPNYMDN EEQDAGISTI  360
DLEPSNDVKV EMPVTRENWK CELAGSIESI DYNFFSGKDD NLESELTDGN LGLGFCYKPS  420
TEMKAEAPVL MEEVEVEPRG FTDFNSYKGF GNTYDHMPHE PTGLICQQEM NTTTPTDFKA  480
LTPVNYGGFN SFKNKLDFMH SWPAEAITDG KPFALIRNDN CGLRPKESYN SDQLESSSTN  540
YPERGGLQDP IAEAQGGFNQ YETGSGEDCK LGFSRLDVDL DLVTDLWFPE HGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38340.1	3e-34	ERF family protein