PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288971.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 397aa    MW: 44400.8 Da    PI: 5.9521
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-09270317448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++q+G g+W+ I r +      Rt+ +++++w+++l
   XP_021288971.1 270 WTLAEVIKLVDGIAQYGVGRWTDIKRLLFassAYRTPVDLRDKWRNLL 317
                      ********************************99************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MKTDRKPHLI KKLSDMKRQR VDESIVPGLE DEATEVEHLL AEPKSEHVSV DGVLCLGKEN  60
LEKHLKMEDF SCAFDYGWKI NCGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIHAAHDL  120
SGACEDFLLD IEFPEKFAEL EPCEGSNLHN SSSESHSPGF SGSSNSAGGI SESSIAAVQE  180
SNGRNGVLGK MVNCDVHQTF WSKCGCQAPV MDTIHPTIEN VQDLDQSDDD EKPLELESDY  240
ELSASESEDE LEKSKRSKTA CDRRKHQRMW TLAEVIKLVD GIAQYGVGRW TDIKRLLFAS  300
SAYRTPVDLR DKWRNLLRSS SALKHNRREV DNDLKHAVRP LPKPVVRRIR ELATIHPYPR  360
VRSPKISPVD APSSKHPTTK GAPVYPHARN LRRKKCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-24MYB_related family protein