PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288970.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 460aa MW: 51579.1 Da PI: 7.2278

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.3e-09	333	380	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++q+G g+W+ I r + Rt+ +++++w+++l XP_021288970.1 333 WTLAEVIKLVDGIAQYGVGRWTDIKRLLFassAYRTPVDLRDKWRNLL 380 ******************************99**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MNEVDESIVP GLEDEATEVE HLLAEPKSEH VSVDGVLCLG KENLEKHLKM EDFSCAFDYG 60 WKINCGGLDS IHGQGGDDLK LEVLDGLLDE VDEVDDIHAA HDLSGACEDF LLDIEFPEKF 120 AELEPCEGSN LHNSSSESHS PGFSGSSNSA GGISESSIAA VQESNGRNGV LGKMVNCDVH 180 QTFWSKCGCQ APVMDTIHPT IENVQDLDQS DDDEKPLVSF ILSNKKVKSS VKVTRGGTLL 240 RQKRLRKPTR RYIEEFSRNS TASGKNKRLK VRSQELPQDP SESRPRRGRP RKIVPQLELE 300 SDYELSASES EDELEKSKRS KTACDRRKHQ RMWTLAEVIK LVDGIAQYGV GRWTDIKRLL 360 FASSAYRTPV DLRDKWRNLL RSSSALKHNR REVDNDLKHA VRPLPKPVVR RIRELATIHP 420 YPRVRSPKIS PVDAPSSKHP TTKGAPVYPH ARNLRRKKCS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MNEVDESIVP GLEDEATEVE HLLAEPKSEH VSVDGVLCLG KENLEKHLKM EDFSCAFDYG  60
WKINCGGLDS IHGQGGDDLK LEVLDGLLDE VDEVDDIHAA HDLSGACEDF LLDIEFPEKF  120
AELEPCEGSN LHNSSSESHS PGFSGSSNSA GGISESSIAA VQESNGRNGV LGKMVNCDVH  180
QTFWSKCGCQ APVMDTIHPT IENVQDLDQS DDDEKPLVSF ILSNKKVKSS VKVTRGGTLL  240
RQKRLRKPTR RYIEEFSRNS TASGKNKRLK VRSQELPQDP SESRPRRGRP RKIVPQLELE  300
SDYELSASES EDELEKSKRS KTACDRRKHQ RMWTLAEVIK LVDGIAQYGV GRWTDIKRLL  360
FASSAYRTPV DLRDKWRNLL RSSSALKHNR REVDNDLKHA VRPLPKPVVR RIRELATIHP  420
YPRVRSPKIS PVDAPSSKHP TTKGAPVYPH ARNLRRKKCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	292	RRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-24	MYB_related family protein