PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288947.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 400aa MW: 43596.4 Da PI: 8.7161

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.8	5.9e-26	148	191	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_021288947.1 148 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 191 79***************************************997 PP
2	QLQ	53.8	5.7e-19	77	113	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k XP_021288947.1 77 SYFSLAQWQELELQALIYRYMLAGATVPPELLQPIRK 113 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MDLHLKQWRN QHESEQQPSA KIPKLLLDPH HQHQQQQQQH PSESSALPLF VPEPNSKISS 60 NLSAVPDSTT RFPRMGSYFS LAQWQELELQ ALIYRYMLAG ATVPPELLQP IRKVFFTLHI 120 FLHHPLQHYS XLQPALLQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHMH 180 RGRNRSRKPV EMPTSSTTAN NNATAPFGGA SGAGVGAIGC GALKVSSPIT ASPLAVVASG 240 TNNFGLSGPY PPIDLLHLNH SSSESKNEHK GLIEAQNEVD NRSDGHILRP FFDDWPRSQQ 300 EPDNAGTSAS PMNSATCLSM SVPGNSSSDV SLKLSTGNVD QLGPRDSGRN WAAGWATNQV 360 ASMGGPLAEA LRSSTSNSSP TSVLHQLPRG SASETSYVST

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MDLHLKQWRN QHESEQQPSA KIPKLLLDPH HQHQQQQQQH PSESSALPLF VPEPNSKISS  60
NLSAVPDSTT RFPRMGSYFS LAQWQELELQ ALIYRYMLAG ATVPPELLQP IRKVFFTLHI  120
FLHHPLQHYS XLQPALLQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHMH  180
RGRNRSRKPV EMPTSSTTAN NNATAPFGGA SGAGVGAIGC GALKVSSPIT ASPLAVVASG  240
TNNFGLSGPY PPIDLLHLNH SSSESKNEHK GLIEAQNEVD NRSDGHILRP FFDDWPRSQQ  300
EPDNAGTSAS PMNSATCLSM SVPGNSSSDV SLKLSTGNVD QLGPRDSGRN WAAGWATNQV  360
ASMGGPLAEA LRSSTSNSSP TSVLHQLPRG SASETSYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-76	GRF family protein