PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288883.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 332aa MW: 36813.4 Da PI: 7.211

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl XP_021288883.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	46.5	8.6e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ XP_021288883.1 68 GQFSEAEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SEAEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKRLSGMG 120 IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRID FQLQQSNAAP 180 GNNTVPYVTS KQEEKDDAVE TIKLNLSRAM QEPDMLPLNK PWESSGATSA NFAGACSVFP 240 VSVTGFQYGP PSFGNEGGGS PWSQSMCTGS TCTAGEQGRS HEKLKDENGD ESEGGKEIKN 300 ASSIFNTDCV LWDIPSDDLI NPIYREAFNN KE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-119	MYB family protein