PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288865.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 744aa MW: 83665.9 Da PI: 5.7232

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.2	7.5e-05	517	577	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq+++ e++ ++ + ++++++ A+kl ++t +q ++W Nr+a+ XP_021288865.1 517 KRKRTIMNDEQVTIIERALLDEPEMqrNTASIQSWADKLchhgsEVTCSQLRNWLNNRKAR 577 79****************97777225678***************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MFMDVACRAV HLVVRFLQNK LSAQHTDICA KLSPTAEFIV NYLCQQCEAS LQFLQLLCQQ 60 KPFRERILRN KELCGKGGIL FLAQSILKLH ASYFVESSTV MAALSRMKAK VLSILLNLCE 120 AESISYLDEV ASSPGSLDLA KSVALEVLEL LKTGLSKDPK PLTASSDRTY PMGLLQLNAM 180 RLADIFSDDS NFRSYITVHF TDFLSAIFSL SHGDFLSMWC SADLPVREED ATLYYEIFPA 240 VGWALESLSS SDLANTRDLY FNFIYNNMSQ ASYVHQRTSL FVKVIANLHC FVPNICEEQE 300 RNLFLHKFLG CLRKDPSKLL PSFAFVSGPQ KAAAIYRNLR SLLSHAESLI PTFLNEDDLQ 360 LLRVFFDQLQ SLINPAEFEE NRVQEDRSLG GCSSPLLRRE PPDRNNRNGN LKEEMSENSA 420 FQEEEQCFVR SNHMDQADDM TRQDMMDDKD KSVTPIGLKE IDRDVQNVET SGSDTSSTKG 480 KNAVDKLVER LRDSTPAGVR EDEKVETVQT EEKQRRKRKR TIMNDEQVTI IERALLDEPE 540 MQRNTASIQS WADKLCHHGS EVTCSQLRNW LNNRKARLAR ASKDARPPPE PDNAFAGKQG 600 GPQPGHPFKA PDSSGEEAAP SNTRGTRSMS RISTSENPEA PEFVDFGAAE FVQCKPGQFV 660 VLVDGRGEEI GKGKVHQVQG KWCGKSLEES GTCVVDAVDL KADRWVKLPY PSEATGSSFE 720 EAEKKFGVMR VMWDSNKIFL LRPQ

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MFMDVACRAV HLVVRFLQNK LSAQHTDICA KLSPTAEFIV NYLCQQCEAS LQFLQLLCQQ  60
KPFRERILRN KELCGKGGIL FLAQSILKLH ASYFVESSTV MAALSRMKAK VLSILLNLCE  120
AESISYLDEV ASSPGSLDLA KSVALEVLEL LKTGLSKDPK PLTASSDRTY PMGLLQLNAM  180
RLADIFSDDS NFRSYITVHF TDFLSAIFSL SHGDFLSMWC SADLPVREED ATLYYEIFPA  240
VGWALESLSS SDLANTRDLY FNFIYNNMSQ ASYVHQRTSL FVKVIANLHC FVPNICEEQE  300
RNLFLHKFLG CLRKDPSKLL PSFAFVSGPQ KAAAIYRNLR SLLSHAESLI PTFLNEDDLQ  360
LLRVFFDQLQ SLINPAEFEE NRVQEDRSLG GCSSPLLRRE PPDRNNRNGN LKEEMSENSA  420
FQEEEQCFVR SNHMDQADDM TRQDMMDDKD KSVTPIGLKE IDRDVQNVET SGSDTSSTKG  480
KNAVDKLVER LRDSTPAGVR EDEKVETVQT EEKQRRKRKR TIMNDEQVTI IERALLDEPE  540
MQRNTASIQS WADKLCHHGS EVTCSQLRNW LNNRKARLAR ASKDARPPPE PDNAFAGKQG  600
GPQPGHPFKA PDSSGEEAAP SNTRGTRSMS RISTSENPEA PEFVDFGAAE FVQCKPGQFV  660
VLVDGRGEEI GKGKVHQVQG KWCGKSLEES GTCVVDAVDL KADRWVKLPY PSEATGSSFE  720
EAEKKFGVMR VMWDSNKIFL LRPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	520	RRKRKR