PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288829.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 496aa MW: 56175.9 Da PI: 6.7138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	54	100	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd ll +avk+ ++Wk+Ia+ ++ gRt+ qc +rwqk+l XP_021288829.1 54 KGGWSQEEDNLLTEAVKKCNARNWKKIAEFLP-GRTDIQCLHRWQKVL 100 688***************************.**********986 PP
2	Myb_DNA-binding	56.6	6.1e-18	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + ++v+++G ++W+ Ia+ + gR +kqc++rw+++l XP_021288829.1 106 KGPWTKEEDDCITKLVEKYGCRRWSVIAKFLR-GRIGKQCRERWYNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	50.8	3.9e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l+ +++ +G++ W+t a+ ++ gRt++ +k++w+ XP_021288829.1 158 KDSWTEEEEAALAYYHQIYGNK-WTTLAKLLP-GRTDNAIKNHWN 200 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MVEVKKEKEE YYEDLAEEDI SASRSSFPDS SCDTAMRSAS LQGKVTGPTR YSRKGGWSQE 60 EDNLLTEAVK KCNARNWKKI AEFLPGRTDI QCLHRWQKVL NPGIFKGPWT KEEDDCITKL 120 VEKYGCRRWS VIAKFLRGRI GKQCRERWYN HLDPTIRKDS WTEEEEAALA YYHQIYGNKW 180 TTLAKLLPGR TDNAIKNHWN CTLKKKLGFY SSNCYAVDIC DDGSSDFSDQ EISPNCIKVR 240 EERQGLDETV SVYPNIDVDY SVDRCNLDLV LGIANQTETK PEADSGKFEK CWSAGVPNEQ 300 ITPLKRVHFD DKVNTTAEDS LIISVRSNAK HTKIHEPQSA SCRATSEDTQ ALLPSTSVGS 360 PLSPLTFKFG EDNGQVDKEN TNQRMHTAYA SDCLLHNEPS QLKDSTSAIY PIVDNQDMHI 420 KSSFCYSAPP KLVGSCSLNS SSPESILRIS AMTFKSPSII RKRSYKKAWT DNFSDAACSP 480 ARTFTCFHWE EVNGTY

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MVEVKKEKEE YYEDLAEEDI SASRSSFPDS SCDTAMRSAS LQGKVTGPTR YSRKGGWSQE  60
EDNLLTEAVK KCNARNWKKI AEFLPGRTDI QCLHRWQKVL NPGIFKGPWT KEEDDCITKL  120
VEKYGCRRWS VIAKFLRGRI GKQCRERWYN HLDPTIRKDS WTEEEEAALA YYHQIYGNKW  180
TTLAKLLPGR TDNAIKNHWN CTLKKKLGFY SSNCYAVDIC DDGSSDFSDQ EISPNCIKVR  240
EERQGLDETV SVYPNIDVDY SVDRCNLDLV LGIANQTETK PEADSGKFEK CWSAGVPNEQ  300
ITPLKRVHFD DKVNTTAEDS LIISVRSNAK HTKIHEPQSA SCRATSEDTQ ALLPSTSVGS  360
PLSPLTFKFG EDNGQVDKEN TNQRMHTAYA SDCLLHNEPS QLKDSTSAIY PIVDNQDMHI  420
KSSFCYSAPP KLVGSCSLNS SSPESILRIS AMTFKSPSII RKRSYKKAWT DNFSDAACSP  480
ARTFTCFHWE EVNGTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-79	MYB family protein