PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288816.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 497aa MW: 56332.1 Da PI: 6.8611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	55	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd ll +avk+ ++Wk+Ia+ ++ gRt+ qc +rwqk+l XP_021288816.1 55 KGGWSQEEDNLLTEAVKKCNARNWKKIAEFLP-GRTDIQCLHRWQKVL 101 688***************************.**********986 PP
2	Myb_DNA-binding	56.5	6.2e-18	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + ++v+++G ++W+ Ia+ + gR +kqc++rw+++l XP_021288816.1 107 KGPWTKEEDDCITKLVEKYGCRRWSVIAKFLR-GRIGKQCRERWYNHL 153 79****************************.***********97 PP
3	Myb_DNA-binding	50.8	4e-16	159	201	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l+ +++ +G++ W+t a+ ++ gRt++ +k++w+ XP_021288816.1 159 KDSWTEEEEAALAYYHQIYGNK-WTTLAKLLP-GRTDNAIKNHWN 201 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MVEVKKEKEE YYEDLAEEDI SASRSSFPDS SCDTAMRSAS LQGRKVTGPT RYSRKGGWSQ 60 EEDNLLTEAV KKCNARNWKK IAEFLPGRTD IQCLHRWQKV LNPGIFKGPW TKEEDDCITK 120 LVEKYGCRRW SVIAKFLRGR IGKQCRERWY NHLDPTIRKD SWTEEEEAAL AYYHQIYGNK 180 WTTLAKLLPG RTDNAIKNHW NCTLKKKLGF YSSNCYAVDI CDDGSSDFSD QEISPNCIKV 240 REERQGLDET VSVYPNIDVD YSVDRCNLDL VLGIANQTET KPEADSGKFE KCWSAGVPNE 300 QITPLKRVHF DDKVNTTAED SLIISVRSNA KHTKIHEPQS ASCRATSEDT QALLPSTSVG 360 SPLSPLTFKF GEDNGQVDKE NTNQRMHTAY ASDCLLHNEP SQLKDSTSAI YPIVDNQDMH 420 IKSSFCYSAP PKLVGSCSLN SSSPESILRI SAMTFKSPSI IRKRSYKKAW TDNFSDAACS 480 PARTFTCFHW EEVNGTY

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MVEVKKEKEE YYEDLAEEDI SASRSSFPDS SCDTAMRSAS LQGRKVTGPT RYSRKGGWSQ  60
EEDNLLTEAV KKCNARNWKK IAEFLPGRTD IQCLHRWQKV LNPGIFKGPW TKEEDDCITK  120
LVEKYGCRRW SVIAKFLRGR IGKQCRERWY NHLDPTIRKD SWTEEEEAAL AYYHQIYGNK  180
WTTLAKLLPG RTDNAIKNHW NCTLKKKLGF YSSNCYAVDI CDDGSSDFSD QEISPNCIKV  240
REERQGLDET VSVYPNIDVD YSVDRCNLDL VLGIANQTET KPEADSGKFE KCWSAGVPNE  300
QITPLKRVHF DDKVNTTAED SLIISVRSNA KHTKIHEPQS ASCRATSEDT QALLPSTSVG  360
SPLSPLTFKF GEDNGQVDKE NTNQRMHTAY ASDCLLHNEP SQLKDSTSAI YPIVDNQDMH  420
IKSSFCYSAP PKLVGSCSLN SSSPESILRI SAMTFKSPSI IRKRSYKKAW TDNFSDAACS  480
PARTFTCFHW EEVNGTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	8e-80	MYB family protein