PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288751.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GeBP

Protein Properties

Length: 383aa MW: 42823.1 Da PI: 5.2086

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	126.7	1e-39	165	261	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrl+se+Dei++L+G++d+ ak+g++p +d++afy+fvkksi+++v+k ql++KirrL+kKf+++ k k+g++++fsk h+qk+f+lskkiW XP_021288751.1 165 LFQRLFSEDDEIAVLKGMLDYYAKKGADPCADMNAFYDFVKKSIHIDVTKAQLMDKIRRLRKKFENNAGKGKKGEDKTFSKVHEQKAFDLSKKIW 259 79********************************************************************************************* PP DUF573 97 gs 98 g+ XP_021288751.1 260 GK 261 95 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MARKRSNPIE DPPTASSSEE EKEETSSEEE EEGSSSEEEE EEPKTQTTPQ SQKPQPPKKP 60 DIATAATVGE ESDESDTDSE SESDTDSQTP KPIATKPMEE ASNTKKPRSK PLVSPIKASS 120 TKRPSESEQE AKDVKRAKKK AGEEVTEVAV VEEVKKTGED AKKQLFQRLF SEDDEIAVLK 180 GMLDYYAKKG ADPCADMNAF YDFVKKSIHI DVTKAQLMDK IRRLRKKFEN NAGKGKKGED 240 KTFSKVHEQK AFDLSKKIWG KEGISGKTES SAVKSNGKTK GNTKALPVVK PEIFSPEKKV 300 EPMDLDNKIK SVVSFFDKSI GLAGMEEKIL KHGLEITGAE KRAALEEKWR KLQIAELELF 360 LQRSELIKEE AKMLLEFYQS EDK

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MARKRSNPIE DPPTASSSEE EKEETSSEEE EEGSSSEEEE EEPKTQTTPQ SQKPQPPKKP  60
DIATAATVGE ESDESDTDSE SESDTDSQTP KPIATKPMEE ASNTKKPRSK PLVSPIKASS  120
TKRPSESEQE AKDVKRAKKK AGEEVTEVAV VEEVKKTGED AKKQLFQRLF SEDDEIAVLK  180
GMLDYYAKKG ADPCADMNAF YDFVKKSIHI DVTKAQLMDK IRRLRKKFEN NAGKGKKGED  240
KTFSKVHEQK AFDLSKKIWG KEGISGKTES SAVKSNGKTK GNTKALPVVK PEIFSPEKKV  300
EPMDLDNKIK SVVSFFDKSI GLAGMEEKIL KHGLEITGAE KRAALEEKWR KLQIAELELF  360
LQRSELIKEE AKMLLEFYQS EDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-40	GeBP family protein