PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288722.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

DBB

Protein Properties

Length: 296aa MW: 31719.3 Da PI: 5.6377

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl XP_021288722.1 4 QCNVCEAAEAKVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	30.1	1e-09	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C l++H H XP_021288722.1 52 SQMPKCDICQETSGLFFCLQDRALLCRKCDLAIHTAntyvsgH 94 689******99*******************654455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MKIQCNVCEA AEAKVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSSS SSQMPKCDIC 60 QETSGLFFCL QDRALLCRKC DLAIHTANTY VSGHQRFLLT GVKVGLETTD PGASSSNVQS 120 ASNEKTSETK SNSTSRRGTP MAFTGGQNEV LPANAGVGNS VPTQVLYAGG SAAGSIQSWQ 180 MDDLFGLTDF NQSYGYMDNV SSKADSGKRG DSDSSSVLRS AEEEVDDDEC LGQVPESSCA 240 VPQVPSPPTA SGLYWPKDSH NQSDGVVFVP DICSSIVKNP FHSRYRGFPP KRQRQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-97	DBB family protein