PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288470.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family RAV
Protein Properties Length: 312aa    MW: 35710.6 Da    PI: 9.7887
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.3e-093279154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    s+++GV     + +W A+I        ++ ++lg++  +eeAa a+++a++kl 
  XP_021288470.1 32 SRFRGVLALN-NSKWGARISLK-----YRAYWLGTYQVEEEAAIAYDRAALKLQ 79
                    6788885444.78*****9993.....5***********************985 PP
2B357.91.9e-18151243183
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+lt+ dv++ + + +pk++a ++          g+  + s++lt++d+  r W+++++y+ + +++++tkGW++Fv  n+L+  D+++F+
  XP_021288470.1 151 FHKKLTQTDVSQIKGFHIPKEYALQYlppldnssdgGQMRNDSVDLTFYDKFYRPWTFRYSYWCSTKTFLFTKGWRHFVAMNNLNIADTIMFY 243
                     89*****************************999985555699*************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MVGSSDSNKI IPCRKTSQYR MRSSCSSGRI SSRFRGVLAL NNSKWGARIS LKYRAYWLGT  60
YQVEEEAAIA YDRAALKLQR SDSPLNFPWK IYTAQEKLFQ SSYSNEEILS MIKDKTYTSN  120
LISFLGRESL VRRRMSGCLI NAKGISHQLL FHKKLTQTDV SQIKGFHIPK EYALQYLPPL  180
DNSSDGGQMR NDSVDLTFYD KFYRPWTFRY SYWCSTKTFL FTKGWRHFVA MNNLNIADTI  240
MFYGCAFVEE GQSRNFYMID IHRNDAASYI VGRDAEQGIG AQPNIIDNGA HVDGISGVER  300
KNGVKLFGIQ IA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-53RAV family protein