PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288421.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 358aa    MW: 38744.5 Da    PI: 4.7309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-112823221055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_021288421.1 282 RKRRERINERLKILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 322
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MDSMGAAILE GEWSSLSGTY TTEEADFMAQ LLSNCPLPDE LDGSSNLGIP STYWPGHHST  60
ISMKGASYCS SDIANTSSYS FSQGSSYSAG SSIVFPSSSQ ESYYLSDSHP IFVANNSPMS  120
MDFCMEDATN TSSYLIEGDD CLNQETGNGN VEQAGKSYHE PALPNKNLEP KRESEIPQPE  180
PATEIKSNNI SENSKKRSRS SGDVQKNRQN ARSKKNQGSA SITNKDKDGN AGLNGQSSAS  240
CSSDDDSNAS QELNGGQAAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLKILQSLVP  300
NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDL KVATPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-67bHLH family protein