PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288373.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 493aa MW: 54412.9 Da PI: 7.0835

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	191	234	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e XP_021288373.1 191 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 234 79***************************************987 PP
2	QLQ	52.3	1.7e-18	136	171	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+q+L++Q ++yKy++ + PvP+eLl +i++ XP_021288373.1 136 PFTAAQWQELERQTMIYKYMMVSEPVPSELLIPITR 171 9********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MGTRNNAFVG TEKEFGTNHC DVGLALRMQQ VEQSCPNKSF MPMPHHSSHH QLSLSSSSCC 60 GDGFDGGACG GGPXVCNTSN QVPCTGEXYD VVGAALASAA AAVVFKSLHH HPFSADPSFH 120 NNCSGEMAAP VNARVPFTAA QWQELERQTM IYKYMMVSEP VPSELLIPIT RNPSNVIKGS 180 LELGFSGNSS DPEPWRCRRT DGKKWRCSRD VAPDQKYCER HSHKSRPRSR KPVELPNHSV 240 NNNDHKPHTL NMASDKQPRQ NPHFISDAHL LSSSFDQPRC LEWFIKGETT VPFAGNSSPE 300 WQQFQTQGTK YGRNVSEHQQ QYYNDHRLNL QAQHLNEQFS PGFASLGGAS NLNQTHSQET 360 RSFIDAWSTA EREVAEMDGI GSKRPLCSNE KLPLSSLTLS MSGGSGNNQE EDDENSQMCA 420 FDNMGLAAEN XRALRPQMAN PVSWMGSPPG GPWLKHCALV LQVVKAQMQV TAARAHEKIG 480 EAQLYINLRI SAL

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MGTRNNAFVG TEKEFGTNHC DVGLALRMQQ VEQSCPNKSF MPMPHHSSHH QLSLSSSSCC  60
GDGFDGGACG GGPXVCNTSN QVPCTGEXYD VVGAALASAA AAVVFKSLHH HPFSADPSFH  120
NNCSGEMAAP VNARVPFTAA QWQELERQTM IYKYMMVSEP VPSELLIPIT RNPSNVIKGS  180
LELGFSGNSS DPEPWRCRRT DGKKWRCSRD VAPDQKYCER HSHKSRPRSR KPVELPNHSV  240
NNNDHKPHTL NMASDKQPRQ NPHFISDAHL LSSSFDQPRC LEWFIKGETT VPFAGNSSPE  300
WQQFQTQGTK YGRNVSEHQQ QYYNDHRLNL QAQHLNEQFS PGFASLGGAS NLNQTHSQET  360
RSFIDAWSTA EREVAEMDGI GSKRPLCSNE KLPLSSLTLS MSGGSGNNQE EDDENSQMCA  420
FDNMGLAAEN XRALRPQMAN PVSWMGSPPG GPWLKHCALV LQVVKAQMQV TAARAHEKIG  480
EAQLYINLRI SAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-37	GRF family protein