PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021288370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 41202.3 Da PI: 4.7906 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.6e-09 | 16 | 48 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg+W++ Ed++l+ ++++G ++W++ ++ g R XP_021288370.1 16 RGPWSPAEDLRLISFIQKHGHENWRALPKQAG--R 48 89**************************9998..4 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_021288370.1 65 RGNFTREEEDTIIRLHEGLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 110 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 370 aa Download sequence |
MGKGRAPCCD KNQVKRGPWS PAEDLRLISF IQKHGHENWR ALPKQAGRSL LLFFSLSLSL 60 SLSLRGNFTR EEEDTIIRLH EGLGNKWSKI ASHLPGRTDN EIKNVWNTHL KRRLASKNGN 120 IQQTDESKES SMTSSSSCSS ITFVSSSSGK RNLEIDIEHQ WDEGSVNKKP REAFAMSVSD 180 TAQDFKTEPS NHSSPSEEPK ELSSSSISSN NSNITNSSQI DVSNPENQAG SLFYCVGLFD 240 ANNASEEVNK PEILDTAFDI PLESDLDFWD MLDNLGSFQS DGIHLHEMEG NQSSNFGEGY 300 IKEAVNKKWL HDLENELGLE VTGDENQNDL SNNAAEPLVP EMYDMLLKPE ADMGMGHHHT 360 WPSSQHSPAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79180.1 | 4e-52 | MYB family protein |