PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288308.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 292aa MW: 33340.4 Da PI: 8.8083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.8e-49	18	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk +e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+ XP_021288308.1 18 PGFRFHPTDEELVGFYLRRKVDRKPIRM-ELIKTIDIYKYDPWDLPKPSIVGESESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQgg 111 9*************************.99***********75556889**********************************955 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLv+y+g+a kg+ktdW+mhe+r+ XP_021288308.1 112 qGHACIGLKKTLVYYRGTAGKGTKTDWMMHEFRM 145 44445*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MNLVQATADN KDEDVPLPGF RFHPTDEELV GFYLRRKVDR KPIRMELIKT IDIYKYDPWD 60 LPKPSIVGES ESYFFCKRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSQG GQGHACIGLK 120 KTLVYYRGTA GKGTKTDWMM HEFRMPSNDS NTNTSLSNPK SIAQEAEVWT ICRIFKRNAS 180 QRKYTPDWRE VAAKRPSTST PSSQTCSVES NSHETYISFG SEVVQHYDEK PVVNHINGRS 240 QWHVDQLSTI AQPSSMASSS SFSNFPETDF FTHANWDELK SVVEFALDPL LM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-88	NAC family protein