PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288110.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 329aa MW: 36604.6 Da PI: 8.3298

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.5	3.1e-15	233	320	11	96
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++grlvlpk++ae++ +++ ++++ ++++d +g We++++y + ++++yvl+ G k++ + + + gD+v+F+ +++++++l++++ XP_021288110.1 233 ARNGRLVLPKRCAEAYfpDISAQQGIFVVVQDIKGDDWEFYYRYwsNTNGKMYVLE-GLKDYIISEQWQPGDTVTFY-KREEDGKLFMGL 320 5789************8888899***************544444458888.******************.444999888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MASSSSAFTK LCFHCKAPSV NFFIGWQLRN GGFAMLCYSC GSAYSKGTFC DTFHPEATGW 60 RDCASCRKRI HCGCIMASST YTILDFGGVK CTECAVNEAL APHRCSPSFW SPQAIQHAMD 120 SAKRLYIDHE KAITGIKSGI DPIASPNSVV CNVLPKKIAT PTIPGAAFQA QFPLSETGEE 180 SSVNSPDGTN NSCQKKGGKH RKDVYRKTRV QSRYSPQTSL EELKEICRVD AEARNGRLVL 240 PKRCAEAYFP DISAQQGIFV VVQDIKGDDW EFYYRYWSNT NGKMYVLEGL KDYIISEQWQ 300 PGDTVTFYKR EEDGKLFMGL KKVQAGKSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	7e-53	B3 family protein