PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288072.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 591aa MW: 65569.5 Da PI: 7.3155

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.7	1.8e-37	185	303	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ ++s++ +++ ++++ ++ + XP_021288072.1 185 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIRKAKPAIDELAELppwnpeilTTSTS-----VTKPNNQDDQNTT 274 79**************************************************************5544444322222.....1222222222222 PP TCP 89 kaaksaa.kskksqksaasalnlakesra 116 a++++ + + + s + + nla+ s+ XP_021288072.1 275 TTANNDKpYQFDIHPSGNLVENLAAGSST 303 22222221333333333334444443332 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MELETLNGRA FWGRQRYQLE QEKRKDLSLD PQRNHHHHQQ RQQQQQQHHP PHHHQHQNPI 60 LNSSHIGVVG EEEKERATQN QQETSFSHRH QYLQETQSQQ QQGQRLYASL DRQVIQQQEQ 120 ESPQPAKKRT YFASSSSSAF GSKSTEHART MGDSHHQAAT SSRLGIRHTG GEIVEVQGGH 180 IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA VDWLIRKAKP 240 AIDELAELPP WNPEILTTST SVTKPNNQDD QNTTTTANND KPYQFDIHPS GNLVENLAAG 300 SSTRRRTATI MGNEVQSLQQ QDMGDNPNNT SGFIPPSLVS DEIADTIKSF FPLGASSATP 360 SSSIQFQNYP PDLLSRTSSQ SQDLRLSLQS FTEPILLQHH HHQAATAQAQ HSEPVLFSGT 420 SPLGGFDGSS AGWEHHHQHP AEIGRFQRLV AWNNSGGAVD TGNGSGGGAG GGVGGFIFGT 480 PPPQALPPSF GQNSQLFSQR GPLQSSNTPM VHAWIDQPIS ATDEHQHHHH HHRHHHQIPQ 540 TIHHQAALSG IGFTTSGVFS GFRIPARIQG EEEEHDSIAN KLSSASSDSH H

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MELETLNGRA FWGRQRYQLE QEKRKDLSLD PQRNHHHHQQ RQQQQQQHHP PHHHQHQNPI  60
LNSSHIGVVG EEEKERATQN QQETSFSHRH QYLQETQSQQ QQGQRLYASL DRQVIQQQEQ  120
ESPQPAKKRT YFASSSSSAF GSKSTEHART MGDSHHQAAT SSRLGIRHTG GEIVEVQGGH  180
IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA VDWLIRKAKP  240
AIDELAELPP WNPEILTTST SVTKPNNQDD QNTTTTANND KPYQFDIHPS GNLVENLAAG  300
SSTRRRTATI MGNEVQSLQQ QDMGDNPNNT SGFIPPSLVS DEIADTIKSF FPLGASSATP  360
SSSIQFQNYP PDLLSRTSSQ SQDLRLSLQS FTEPILLQHH HHQAATAQAQ HSEPVLFSGT  420
SPLGGFDGSS AGWEHHHQHP AEIGRFQRLV AWNNSGGAVD TGNGSGGGAG GGVGGFIFGT  480
PPPQALPPSF GQNSQLFSQR GPLQSSNTPM VHAWIDQPIS ATDEHQHHHH HHRHHHQIPQ  540
TIHHQAALSG IGFTTSGVFS GFRIPARIQG EEEEHDSIAN KLSSASSDSH H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	1e-89	TCP family protein