PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288042.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 581aa MW: 63241.6 Da PI: 6.6926

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+++v+ +G g+W+++ + g+ R++k+c++rw ++l XP_021288042.1 36 KGPWTAAEDAVLAEYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	49	1.4e-15	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++v++++++G++ W++ a ++ gRt++++k++w++ XP_021288042.1 89 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MMLMMGGNNQ VTTQNEGGGT SDMHNSCVEG GLTLKKGPWT AAEDAVLAEY VRTHGEGNWN 60 AVQKNTGLAR CGKSCRLRWA NHLRPNLKKG AFSPEEERII VELHAKMGNK WARMATQLPG 120 RTDNEIKNYW NTRVKRKQRQ GLPLYPPEIQ PLYPQHHHSQ PTTPIPSSPT LQSPSSFSFQ 180 TPTTLHRGSM LSPPPHSFHL PRSASQPLLH ISHHAAAAAG PTPFLLSPSP ASTPPPLPSP 240 TPSTPPSTSP LPSPPAFSTL PLFDSSTFNT STSNSTTVNA TSSDHFFFPR TLPSLQTPLR 300 YKRFKQNNDN AESNNNNHNI TVNGSNRIIN SSFMFPLSPL VKSTDVFKPH TTVAATATTS 360 SLTPQHYPSF SLDPITLDLA SSSRILRPHF DSGQFISTPG VAYPLKTELP SYQLLSQDGN 420 SEVTLHANEV NNYSSNYHSS NYPNLSMPVS GNGLLEDMLE EAQVLTGSND LLTRQGGLVD 480 FSSSSECLAS VLKPKEETQE QINTTHEDYS KLLNILPSSM PIPEWYSDSG EGSNGQSSVI 540 TDDNLGLEMH QIASLLPVDH IAPGDLAPAL GTTCLEFAES N

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MMLMMGGNNQ VTTQNEGGGT SDMHNSCVEG GLTLKKGPWT AAEDAVLAEY VRTHGEGNWN  60
AVQKNTGLAR CGKSCRLRWA NHLRPNLKKG AFSPEEERII VELHAKMGNK WARMATQLPG  120
RTDNEIKNYW NTRVKRKQRQ GLPLYPPEIQ PLYPQHHHSQ PTTPIPSSPT LQSPSSFSFQ  180
TPTTLHRGSM LSPPPHSFHL PRSASQPLLH ISHHAAAAAG PTPFLLSPSP ASTPPPLPSP  240
TPSTPPSTSP LPSPPAFSTL PLFDSSTFNT STSNSTTVNA TSSDHFFFPR TLPSLQTPLR  300
YKRFKQNNDN AESNNNNHNI TVNGSNRIIN SSFMFPLSPL VKSTDVFKPH TTVAATATTS  360
SLTPQHYPSF SLDPITLDLA SSSRILRPHF DSGQFISTPG VAYPLKTELP SYQLLSQDGN  420
SEVTLHANEV NNYSSNYHSS NYPNLSMPVS GNGLLEDMLE EAQVLTGSND LLTRQGGLVD  480
FSSSSECLAS VLKPKEETQE QINTTHEDYS KLLNILPSSM PIPEWYSDSG EGSNGQSSVI  540
TDDNLGLEMH QIASLLPVDH IAPGDLAPAL GTTCLEFAES N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	RVKRKQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	4e-70	MYB family protein