PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021287970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 39809.5 Da PI: 7.7044 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g++R++k+c++rw +yl XP_021287970.1 14 KGPWTAEEDQKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_021287970.1 67 RGKFSIEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence |
MGKPPCCDKN GLKKGPWTAE EDQKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SIEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIKKKLLRMG 120 IDPVTHSPRL DLLELSSLLS SSLYNSSQLN PAGLLGFGSM FNPSFLNFAT ALLSSQNKTL 180 EISPENIEQN QTGNFQCQNQ YETYQANQVQ NPIQGYTTSQ ANLNHLSTNP NNNLSCQMSL 240 PNLWQEYDRE NISISTPKGF FPVQNYGYHD SINQSIINSL AENQACFSDQ NNIPNLSPFG 300 SLLSTPSSNS TPLNSSSTTY VNNNGSSTED IERDSYCSNM LMFDVPNALN VNGCV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-85 | MYB family protein |