PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287909.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 459aa MW: 49976.1 Da PI: 6.8027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	350	388	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_021287909.1 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MADEFNTGTN WWDSSRTNTR FDAAGSSSSS SGLNNSLGSF GWATEMVDIK AARSSMDSVS 60 SVSGSSVVFQ DTSKLQGGPD HPPPGDLHMM GLGLSSQAMD WNQALLRGDK SESSFRSMLQ 120 DNLNSNANYQ QETAGMGSSQ VQWRDKMFSG VGRDASVNEF KQISRGFSLD QSQFSPHGSS 180 SDSTVTCQGL PSSFQMDSTA LYGSPSTILQ GLLGSENQAQ QSSYENRSIN YQYGAAAASY 240 GMNTNELLPS WSKVPQFLRS SPPKQHLHGQ LHFSNNAPFW NPSAAASMTD VRPGFFPSLQ 300 TQFPTGNFDE KPRNISEVRE SGTVVKKSGN EPASKRPRNE TPSPLPAFKV RKEKMGDRIT 360 ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVSVLSTPYM KSGAAIQHQQ SSEKSKDPEG 420 PKQDLRSRGL CLVPVSSTFP VTHESTVDFW TPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MADEFNTGTN WWDSSRTNTR FDAAGSSSSS SGLNNSLGSF GWATEMVDIK AARSSMDSVS  60
SVSGSSVVFQ DTSKLQGGPD HPPPGDLHMM GLGLSSQAMD WNQALLRGDK SESSFRSMLQ  120
DNLNSNANYQ QETAGMGSSQ VQWRDKMFSG VGRDASVNEF KQISRGFSLD QSQFSPHGSS  180
SDSTVTCQGL PSSFQMDSTA LYGSPSTILQ GLLGSENQAQ QSSYENRSIN YQYGAAAASY  240
GMNTNELLPS WSKVPQFLRS SPPKQHLHGQ LHFSNNAPFW NPSAAASMTD VRPGFFPSLQ  300
TQFPTGNFDE KPRNISEVRE SGTVVKKSGN EPASKRPRNE TPSPLPAFKV RKEKMGDRIT  360
ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVSVLSTPYM KSGAAIQHQQ SSEKSKDPEG  420
PKQDLRSRGL CLVPVSSTFP VTHESTVDFW TPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-101	bHLH family protein