PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287653.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 540aa    MW: 60158.1 Da    PI: 5.6682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.42.9e-1381695391374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL +cA+a++++d+++a++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf++
  XP_021287653.1 169 LKELLCACAKAIDNNDMHMADWLMTQLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGY 260
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L++aL++Rp+gpps+RiTg+++p+s   +   le +g+rL+k+Ae+++vpfef+  +a + ++
  XP_021287653.1 261 MSANGAIAEAMKDESRVHIIDFQIAQGSQWLTLIHALSARPGGPPSIRITGIDDPTSAyaRGGGLEIVGQRLRKLAESCKVPFEFHS-AAISGTE 354
                     ********************************************************9999999************************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L ++pgEa+aVn+++ lh+++desv ++++rd++L+l kslsPkvv++veqea++n+++F+ rf e++++y a+f+s++++lpre++eri
  XP_021287653.1 355 VQLENLGIQPGEAIAVNFAMTLHHMPDESVGTQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFFPRFYETMNHYLAIFESIDVTLPREHKERI 449
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGF+p pls+++++++k+ll+ + +  y++ee++g l+lgW++r++++ +aWr
  XP_021287653.1 450 NVEQHCLAREIVNIIACEGPERVERHELLGKWRSRFIMAGFTPSPLSSFVNATIKTLLQSYCD-KYTLEEKDGVLYLGWMNRAIIASCAWR 539
                     **************************************************************5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MQTSEKHKIS GKYFDQPVQE LESHCWPPNQ SLDHYQSCSD DGGNGLQYSV QNLEQYCTLE  60
SSSGMQNSSS TASFSPNGSP VSQPNSQSYP SDLHHSPDNA CSSPVSGSCV TDNEHDLKHM  120
IRQLETAMLG TDSDNFDIYA INTSGGATQI SIEEERWKYM MEMIARGDLK ELLCACAKAI  180
DNNDMHMADW LMTQLRQMVS VSGEPIQRLG AYMLEGLVAR LASSGSSIYK ALRCKEPASA  240
ELLSYMHILY EVCPYFKFGY MSANGAIAEA MKDESRVHII DFQIAQGSQW LTLIHALSAR  300
PGGPPSIRIT GIDDPTSAYA RGGGLEIVGQ RLRKLAESCK VPFEFHSAAI SGTEVQLENL  360
GIQPGEAIAV NFAMTLHHMP DESVGTQNHR DRLLRLAKSL SPKVVTLVEQ EANTNTAPFF  420
PRFYETMNHY LAIFESIDVT LPREHKERIN VEQHCLAREI VNIIACEGPE RVERHELLGK  480
WRSRFIMAGF TPSPLSSFVN ATIKTLLQSY CDKYTLEEKD GVLYLGWMNR AIIASCAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0GRAS family protein