PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287245.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 447aa MW: 51764.3 Da PI: 8.6424

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.3	2.5e-17	21	112	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ +p+ +++ l +p+kf+ ++g++ s t+ +sgr+We++l +k ++r++l +GW eFv+ n ++ g f+vF++ ++s+f +v XP_021287245.1 21 FFKIILPHTIAEKK-LKIPNKFVGKFGHE--LSSVATFVLPSGRKWEIRL--TKADDRIWLDDGWHEFVEYNSIRCGYFLVFRYGKDSTF--HVI 108 77777676666665.******999965..7889***********..******************************988888..999 PP EE-S CS B3 96 vfrk 99 +f++ XP_021287245.1 109 IFDN 112 9987 PP
2	B3	46.9	4.8e-15	355	443	7	98
.-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++ s+ + +p f e+ +g+ ++++d++gr+W +++ +++++ ++l+kG +F ++n+LkegD+++F+l +++ + ++++fr XP_021287245.1 355 RRSNFDSSTMHVPAGFDIEYlSGVA-D--HIRVQDSDGREWLIEF--KRHRNFgFLLRKGCYRFWRENNLKEGDVCIFELRDKKAAVHKISIFR 443 556777778999**999976663.3..5***********..9999989***********************987688877777777 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MAHRTRKRPR SNHAVDESLH FFKIILPHTI AEKKLKIPNK FVGKFGHELS SVATFVLPSG 60 RKWEIRLTKA DDRIWLDDGW HEFVEYNSIR CGYFLVFRYG KDSTFHVIIF DNSACEVDYP 120 SYVPSNDEEL TDGESEKRSI HQDSETEEDD SPELLGVKAR NLNERANREA ISGKQDASSQ 180 QHLVRKPQGD AASHKNSEVK QDKETRVKRC KTEEAEFDNL NESRQINSKI KQLRKSHRLP 240 PSKCPLMNQN ATGIHDQDLS VQLQDLKQQF DGKKLKITIQ RANLQSLEAM HKGNEANKKT 300 ESGKQEHGSI QDEEIEIYVS RMFFGTSSTS RDRERAIRAV EVIKPMNPCF MIVLRRSNFD 360 SSTMHVPAGF DIEYLSGVAD HIRVQDSDGR EWLIEFKRHR NFGFLLRKGC YRFWRENNLK 420 EGDVCIFELR DKKAAVHKIS IFRADSN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MAHRTRKRPR SNHAVDESLH FFKIILPHTI AEKKLKIPNK FVGKFGHELS SVATFVLPSG  60
RKWEIRLTKA DDRIWLDDGW HEFVEYNSIR CGYFLVFRYG KDSTFHVIIF DNSACEVDYP  120
SYVPSNDEEL TDGESEKRSI HQDSETEEDD SPELLGVKAR NLNERANREA ISGKQDASSQ  180
QHLVRKPQGD AASHKNSEVK QDKETRVKRC KTEEAEFDNL NESRQINSKI KQLRKSHRLP  240
PSKCPLMNQN ATGIHDQDLS VQLQDLKQQF DGKKLKITIQ RANLQSLEAM HKGNEANKKT  300
ESGKQEHGSI QDEEIEIYVS RMFFGTSSTS RDRERAIRAV EVIKPMNPCF MIVLRRSNFD  360
SSTMHVPAGF DIEYLSGVAD HIRVQDSDGR EWLIEFKRHR NFGFLLRKGC YRFWRENNLK  420
EGDVCIFELR DKKAAVHKIS IFRADSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	1e-29	B3 family protein