PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287206.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 341aa    MW: 38372.9 Da    PI: 5.2481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++++ G g+W+t ++  g++R++k+c++rw +yl
   XP_021287206.1 15 KGPWTPEEDQKLVDYINKNGLGSWRTLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+  +++++  lG++ W++Ia +++ gRt++++k++w+++
   XP_021287206.1  68 RGKFSEEEERVIINLHSVLGNK-WSRIATHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRSPCCAED ANLKKGPWTP EEDQKLVDYI NKNGLGSWRT LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERVII NLHSVLGNKW SRIATHLPGR TDNEIKNFWN THIRKKLLNM  120
GIDPHTHKPR TDLDHLLNLS QLLCAAQLGN LMNPWDTVFK LQADAAQLAK AQLLQNLMQI  180
MNTNKPANVE SAAGFLGSQN PYSLEGLLNG TSTLSAKEQT PQTQNIQNSA GAIPQASSEY  240
QAAEDPWAYF QSGVNYESLD MNNQSFSNSF EQTENPLPKL VSGSPETSPI NQMENKTDTA  300
PDFSIYDYEA WEKLIMEDEA DSSYWKEILD FTSSSSSPIS W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-85MYB family protein