PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021287196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 247aa MW: 28488.3 Da PI: 7.9402 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.8e-07 | 88 | 107 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd C FaHg XP_021287196.1 88 CPAFRN-GRCQKGDACEFAHG 107 556665.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MLKGVNPNFY NFAEQQLISG LNLTQRAQYK DVIDEAIYGS DEFRMYAYKI KRCTRMRSHD 60 WTECPFAHRG EKAQRRDPRK VPYTAIACPA FRNGRCQKGD ACEFAHGVFE YWLHPARYRT 120 RACNAGRFCQ RKVCFFAHTP DELRSESKCK CHFGYKGRMN GEDELLMGIG SGGGDCSTSM 180 QAHDFSVPFA STVNRDCCCL EGFSDFLRRL RAFKIMEEEE REMRNGGGFE VSDSDLPHLD 240 WISELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 2e-75 | C3H family protein |