PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287102.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 334aa MW: 37833.6 Da PI: 4.4056

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	96	149	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe ++++ e++ +LAk lgL+ rq+ +WFqNrRa++k XP_021287102.1 96 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQIAIWFQNRRARWK 149 566899***********************************************9 PP
2	HD-ZIP_I/II	127.8	4.6e-41	95	186	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls +qv++LE+sFe e+kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L ke+++L+ee+ XP_021287102.1 95 EKKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYEALQASYNSLKADYDNLLKEKDKLKEEVL 186 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MAGGRVYPSN TSSAGGSNNL SVLLQSQRVP SSSEPFDPLF IPGSSPSPFL VSGTRSMVSF 60 EDVHRANRAN RSFFRTFDQE ENGDEDLDEY FHQPEKKRRL SVDQVQFLEK SFEVENKLEP 120 ERKVQLAKDL GLQPRQIAIW FQNRRARWKT KQLEKDYEAL QASYNSLKAD YDNLLKEKDK 180 LKEEVLQLTD KLLVEEKEKG NSELSDVNKL SQEPPQKLVV AETASEGEES KVSVVACKQE 240 DISSAKSDIF DSDSPHYTDG VHSSLLEAAD SSYPFEPDQS DLSQDEEDNL SKGLLHPPSY 300 IFPKLEDDEY SDPPASSCNF GFPVEDHAFW SWAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-42	HD-ZIP family protein