PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287087.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 335aa MW: 36193.5 Da PI: 6.9768

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++WT+eEd++l+ +++++G g W++ +++ + R++k+c++rw +yl XP_021287087.1 14 KKAWTAEEDQKLIAYIQKHGEGGWRSLPEKASLQRCGKSCRLRWANYL 61 689*******************************************97 PP
2	Myb_DNA-binding	51.5	2.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +T+eEd+ +++ ++ lG++ W++Iar+++ +Rt++++k++w+ + XP_021287087.1 67 RRDFTPEEDQTIIEHHAALGNR-WAAIARHLP-KRTENEIKNYWNAH 111 5679****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MGRTPFCMAE GLKKKAWTAE EDQKLIAYIQ KHGEGGWRSL PEKASLQRCG KSCRLRWANY 60 LRSGIKRRDF TPEEDQTIIE HHAALGNRWA AIARHLPKRT ENEIKNYWNA HLKKRLATMS 120 IGSVTHKPVG TTPGLSSGNS NTIGNAEPPM VHTKSATTQE SEPTLQQPTS RSTSASALLL 180 NKLASRVNML QSVDLIRACQ IMQLMSSKGI GDGGATANNE SVICHPTSNC QGNNTSTAPD 240 TSIGLDIADL LTTPLNCQDL SEIISPESAK CNASDDGGVS VDNYKIEDPV ADALSILDNN 300 ASTPASSFSS TSDRVSNNMA SKFASLPCVD DEIHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-64	MYB family protein