PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287066.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 350aa MW: 40285.7 Da PI: 9.3739

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.1	1.4e-17	5	95	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ff +l+ s++l+ + l++p +f++++ + s+ l+ ++g +W+v + +k ++++++++GW+eFv+ +++g f++F+++g+s f v++f XP_021287066.1 5 FFHKLILSSTLQDKKLRIPDNFVKKFRDE--LSVAAALTVPDGHVWRVGI--KKADNKVWFQEGWQEFVERYYIRVGYFLIFRYEGNSAF--SVSIF 95 8899999**************999755..999************..********************************9999..88887 PP
2	B3	62.9	5.3e-20	248	338	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae+h +g++ ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD++vF+l +++ef l+v+vf XP_021287066.1 248 VLRPSYLYRGCIMYLPSCFAEKHlSGVSG---FIKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVF 337 78899****************866743...5***********666665..5699******************999*******9 PP - CS B3 98 r 98 r XP_021287066.1 338 R 338 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKADNKVW 60 FQEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFNLINS EINYQSNALI GSQYNHGKQY 120 PFEELEDDEC ISPALQNLFG GTKLNNCINW TGEVNLHTSK GVNNQPIRVK LHSSGAELPK 180 PKKPGRKKRK FDPNEQDSSV GHEDEVEMRX SIYESASARK RTVTAEERER AINAAKAFEP 240 TNPFCRVVLR PSYLYRGCIM YLPSCFAEKH LSGVSGFIKL QLPDGKQWPV RCLYRGGRAK 300 FSQGWYEFTL ENNLGEGDVC VFELLRSREF VLKVTVFRVL ESTGLMNRPQ

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKADNKVW  60
FQEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFNLINS EINYQSNALI GSQYNHGKQY  120
PFEELEDDEC ISPALQNLFG GTKLNNCINW TGEVNLHTSK GVNNQPIRVK LHSSGAELPK  180
PKKPGRKKRK FDPNEQDSSV GHEDEVEMRX SIYESASARK RTVTAEERER AINAAKAFEP  240
TNPFCRVVLR PSYLYRGCIM YLPSCFAEKH LSGVSGFIKL QLPDGKQWPV RCLYRGGRAK  300
FSQGWYEFTL ENNLGEGDVC VFELLRSREF VLKVTVFRVL ESTGLMNRPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	190	PKKPGRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-156	B3 family protein