PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287065.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 322aa    MW: 35629.5 Da    PI: 6.2618
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18241274134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  XP_021287065.1 241 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 274
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MEYCMEARAL KSSVRGELTM QRTQHAALDD FLYMNGAASG EDFSVDCFLN FNSGEFEEEE  60
QKDSFSLSSE ERVADDDSNS NSSSFSFDSL LTNELSVPDD EIAGLEWVSH FVDDSFPELP  120
ISCPVFKPQS ESHAKTRFET EPELVFVKTP SFSSTVPSKA RSKRSKSTGR TWPVGSMPLS  180
ESSSSTITSS STSSGFSVTS TNVQKTDLAN DFPEPPTKKQ KKKPAVQASG LSSGNPFQRR  240
CSHCQVQKTP QWRTGPLGAK TLCNACGVRY KSGRLFPEYR PACSPTFSGD IHSNSHRKVL  300
EMRRRKEVAG QEAELTRMIP SF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.25e-50GATA family protein