PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287041.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 451aa MW: 51006.8 Da PI: 5.8659

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.5	3.2e-22	87	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+++sp+qC++k++nlnk y+++++ +++ +++++++ +++d XP_021287041.1 87 KWTGKMVKLLITILSYIGEDPSTDCvgsqrkmssllRKLGKWKCVSKVMVERGYHVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKLLD 181 7********************988889999999999*****************************************95588888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MEGQRSPGGK VLHGWAYGCQ DLQGSMKPSH EQKPCMLELP SASGLVENEG HENMVIEDDV 60 TNYAEQGTLE HNEVGKSEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CVGSQRKMSS 120 LLRKLGKWKC VSKVMVERGY HVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DVIDLSEKGK EDVRKILTSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLL ILKNENENEL 240 HDLSQPELYG TDQKAGVLAE GDAAEDSGAT SGIPVFSARL RLTNENEIAG FGNTSKPLDS 300 NQPLDAQGDL AEYNGTNSGF SAVSAMWLKQ TNENKVAGLG NPLKPWDCNQ ISDAQPLYNF 360 THQNLCCPEG NEADRSQNQQ MAYRMYQLEM QKLQLKSEML KLEKQRFKWQ CNSLKQDMEV 420 DKMRMENKCL KLGNECIAMQ LKQRSMDLKR D

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MEGQRSPGGK VLHGWAYGCQ DLQGSMKPSH EQKPCMLELP SASGLVENEG HENMVIEDDV  60
TNYAEQGTLE HNEVGKSEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CVGSQRKMSS  120
LLRKLGKWKC VSKVMVERGY HVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DVIDLSEKGK EDVRKILTSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLL ILKNENENEL  240
HDLSQPELYG TDQKAGVLAE GDAAEDSGAT SGIPVFSARL RLTNENEIAG FGNTSKPLDS  300
NQPLDAQGDL AEYNGTNSGF SAVSAMWLKQ TNENKVAGLG NPLKPWDCNQ ISDAQPLYNF  360
THQNLCCPEG NEADRSQNQQ MAYRMYQLEM QKLQLKSEML KLEKQRFKWQ CNSLKQDMEV  420
DKMRMENKCL KLGNECIAMQ LKQRSMDLKR D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-70	Trihelix family protein