PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021286949.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 313aa    MW: 35752.6 Da    PI: 7.5041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021286949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                     +g+WT+eEde l ++vk++G++ W++I r mg + Rt+k+c++rw +
   XP_021286949.1 12 KGPWTAEEDEVLMNYVKKYGPRGWSSI-RSMGlLPRTGKSCRLRWVN 57
                     79************************9.6777788**********87 PP
2Myb_DNA-binding43.57.2e-1468107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +++ +q+G++ W +I+r+++ gRt++++k++w
   XP_021286949.1  68 KFSAEEERXVIELQAQFGNK-WXKISRYLP-GRTDNDVKNFW 107
                      79******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MERQSEGTCI KKGPWTAEED EVLMNYVKKY GPRGWSSIRS MGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS AEEERXVIEL QAQFGNKWXK ISRYLPGRTD NDVKNFWSAR RKRLERILQT  120
PTSISHKNKG KDPVLHEMPM VEVPPSNFIP VELGSSSHHD QAKRPSFSGN XRRFRMVPLP  180
DLVQPDFPNL ETGLPILDIA IIQMIPSIEP SANYPVSLLP QLQLDLPSLP QCQDLAPEPN  240
GLNFEGMFEH QEXSESDSKP KWFASFPSTG INNNAQIGKK EDRRNPAIPD GFFDEFPSDM  300
FDYLDPLPNS SEW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-62MYB family protein