PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021286816.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 313aa    MW: 36267.7 Da    PI: 9.6438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021286816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-18421241299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +s+ l +p +f+++h ++k+ ++  +l+ +sg  W++++  +k++++++++ GW++F + + L ++Df+vF+++g+++f   v++f+k
  XP_021286816.1  42 ASRSLEIPPHFVRTH-LPKRMPTRAVLRGPSGDCWNITM--CKQDRSTIMQHGWQQFYQNHSLGDKDFLVFRYNGNMCF--DVQIFEK 124
                     566799******999.56788899***************..**************************************..9999987 PP
2B351.42e-162223011499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +l++p +f+++h  +    ++ t+ +++ +sW+v+l y+ +    v++kGW++F+ +n+L+  D++vF+l+    +e++v++f +
  XP_021286816.1 222 FLLTIPTSFLNAHLPQ--ARTEFTFWTSKEKSWQVTLLYTETN--KVFSKGWRRFAVDNKLEMDDSCVFELVA--PREMRVHIFPT 301
                     579*******999533..3459***************665554..589**********************986..67789999865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MQSHLESKKK MMMKSPKGVE SNLPDHDNRP SFSMFILHKG DASRSLEIPP HFVRTHLPKR  60
MPTRAVLRGP SGDCWNITMC KQDRSTIMQH GWQQFYQNHS LGDKDFLVFR YNGNMCFDVQ  120
IFEKSGCERN CVSITRMHQD STEKIKEEEM DVTDMVKTKS QVQIGGKAKK NSAEEKDLAS  180
SSKKRPAGRK ITAKLCKAAK DFTSNFPHFK HCITRCNVEI PFLLTIPTSF LNAHLPQART  240
EFTFWTSKEK SWQVTLLYTE TNKVFSKGWR RFAVDNKLEM DDSCVFELVA PREMRVHIFP  300
TERETCSQLF VQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.16e-28B3 family protein