PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286748.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 602aa MW: 67815.6 Da PI: 5.3543

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	343	386	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr+l+Pk + Kl+ a+iL A+e++k+Lq XP_021286748.1 343 VAERKRRKKLNERLYALRSLVPKiS------KLDRASILGDAIEFVKELQ 386 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MNIFQHLLER LRQLVGSKGW DYCVLWKLSD DQRFIEWMDC CCAGAENIDS GGELQFPVTP 60 VLPCRDVMFQ HPKTKSCELL AQLPSCMPLD SGSHAQTLIS NQPKWLNFSN NSDSNVLEEI 120 VGTRTLIPVA GGLVELFVAK QVCEDQNVID YIATLCNISL EQGGMMNSSS MDAHFTELNT 180 QALNELQPKH HLGNEDDQKD PTNHFQQPVS LATTLETLNL PYDISADRIR SCNSPTNSLQ 240 HYNYLSEHKT KIDVYVEGSH DAFLPDHKVA SPYNDNELQE MDPLNSILTN ESILIQGNDK 300 DSIKQENGRS DSMSDCSDQN DDEDDARYQR RPGSKGPQSK NLVAERKRRK KLNERLYALR 360 SLVPKISKLD RASILGDAIE FVKELQNQVK ELQDELEEHS DNDGSKKTGL NGIHKNVQSE 420 IFSQNEIAVD PNPEHDKGPN GFPVGGNGSV SKQKQDVEIT SDKTQQMEVQ VEVAQIDGNQ 480 FFVKVFCEHK PGGFVRLMEA LDSLGLEVTN ANVNSFRGLV SNVFKVEIKD SEMVQADHVR 540 DSLLELTRNP SKGLSEMAKA SENNNGIDCN YHKQQQQLQH HLHNHHISSH HRHLHHFQKQ 600 LA

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MNIFQHLLER LRQLVGSKGW DYCVLWKLSD DQRFIEWMDC CCAGAENIDS GGELQFPVTP  60
VLPCRDVMFQ HPKTKSCELL AQLPSCMPLD SGSHAQTLIS NQPKWLNFSN NSDSNVLEEI  120
VGTRTLIPVA GGLVELFVAK QVCEDQNVID YIATLCNISL EQGGMMNSSS MDAHFTELNT  180
QALNELQPKH HLGNEDDQKD PTNHFQQPVS LATTLETLNL PYDISADRIR SCNSPTNSLQ  240
HYNYLSEHKT KIDVYVEGSH DAFLPDHKVA SPYNDNELQE MDPLNSILTN ESILIQGNDK  300
DSIKQENGRS DSMSDCSDQN DDEDDARYQR RPGSKGPQSK NLVAERKRRK KLNERLYALR  360
SLVPKISKLD RASILGDAIE FVKELQNQVK ELQDELEEHS DNDGSKKTGL NGIHKNVQSE  420
IFSQNEIAVD PNPEHDKGPN GFPVGGNGSV SKQKQDVEIT SDKTQQMEVQ VEVAQIDGNQ  480
FFVKVFCEHK PGGFVRLMEA LDSLGLEVTN ANVNSFRGLV SNVFKVEIKD SEMVQADHVR  540
DSLLELTRNP SKGLSEMAKA SENNNGIDCN YHKQQQQLQH HLHNHHISSH HRHLHHFQKQ  600
LA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	352	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-143	bHLH family protein