PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286746.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 610aa MW: 68691.6 Da PI: 5.3586

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7e-12	351	394	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr+l+Pk + Kl+ a+iL A+e++k+Lq XP_021286746.1 351 VAERKRRKKLNERLYALRSLVPKiS------KLDRASILGDAIEFVKELQ 394 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MSESLTVKMN IFQHLLERLR QLVGSKGWDY CVLWKLSDDQ RFIEWMDCCC AGAENIDSGG 60 ELQFPVTPVL PCRDVMFQHP KTKSCELLAQ LPSCMPLDSG SHAQTLISNQ PKWLNFSNNS 120 DSNVLEEIVG TRTLIPVAGG LVELFVAKQV CEDQNVIDYI ATLCNISLEQ GGMMNSSSMD 180 AHFTELNTQA LNELQPKHHL GNEDDQKDPT NHFQQPVSLA TTLETLNLPY DISADRIRSC 240 NSPTNSLQHY NYLSEHKTKI DVYVEGSHDA FLPDHKVASP YNDNELQEMD PLNSILTNES 300 ILIQGNDKDS IKQENGRSDS MSDCSDQNDD EDDARYQRRP GSKGPQSKNL VAERKRRKKL 360 NERLYALRSL VPKISKLDRA SILGDAIEFV KELQNQVKEL QDELEEHSDN DGSKKTGLNG 420 IHKNVQSEIF SQNEIAVDPN PEHDKGPNGF PVGGNGSVSK QKQDVEITSD KTQQMEVQVE 480 VAQIDGNQFF VKVFCEHKPG GFVRLMEALD SLGLEVTNAN VNSFRGLVSN VFKVEIKDSE 540 MVQADHVRDS LLELTRNPSK GLSEMAKASE NNNGIDCNYH KQQQQLQHHL HNHHISSHHR 600 HLHHFQKQLA

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MSESLTVKMN IFQHLLERLR QLVGSKGWDY CVLWKLSDDQ RFIEWMDCCC AGAENIDSGG  60
ELQFPVTPVL PCRDVMFQHP KTKSCELLAQ LPSCMPLDSG SHAQTLISNQ PKWLNFSNNS  120
DSNVLEEIVG TRTLIPVAGG LVELFVAKQV CEDQNVIDYI ATLCNISLEQ GGMMNSSSMD  180
AHFTELNTQA LNELQPKHHL GNEDDQKDPT NHFQQPVSLA TTLETLNLPY DISADRIRSC  240
NSPTNSLQHY NYLSEHKTKI DVYVEGSHDA FLPDHKVASP YNDNELQEMD PLNSILTNES  300
ILIQGNDKDS IKQENGRSDS MSDCSDQNDD EDDARYQRRP GSKGPQSKNL VAERKRRKKL  360
NERLYALRSL VPKISKLDRA SILGDAIEFV KELQNQVKEL QDELEEHSDN DGSKKTGLNG  420
IHKNVQSEIF SQNEIAVDPN PEHDKGPNGF PVGGNGSVSK QKQDVEITSD KTQQMEVQVE  480
VAQIDGNQFF VKVFCEHKPG GFVRLMEALD SLGLEVTNAN VNSFRGLVSN VFKVEIKDSE  540
MVQADHVRDS LLELTRNPSK GLSEMAKASE NNNGIDCNYH KQQQQLQHHL HNHHISSHHR  600
HLHHFQKQLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	360	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-143	bHLH family protein