PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286616.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 548aa MW: 59587.1 Da PI: 8.143

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.9	7.9e-18	248	297	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_021286616.1 248 RSKHSATEQRRRSKINDRFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 297 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MELPQSRPFG AEGRKSTHDF LSLCSHSSAQ QDPRPPSQGK TSAKEETPVE VATAEKPPPP 60 APPSVEHILP GGIGTYSISH ISYFNPRVPK AEGAIYNVAQ GSSTERNDEN SNCSSYTGSG 120 FTLWEESAGK KGKIRKENAG ETPVVREAAG KVGQWATSSL ERASQSSTNN HRNSFSSLSS 180 SQPSSKRKSQ SFMEMIKSAK GSAQDDDFEE DEDFVFKKES STTTHSKGEL RVKVDGKTAP 240 DQKANTPRSK HSATEQRRRS KINDRFQMLR DLIPHSDQKR DKASFLLEVI EYIQFLQEKV 300 HKYEGTYQGW SCEPSKLMPW RNNHRPTENY ADQSRAINDV SAPALVFSAK FDERNITVAP 360 TIPGSAQKPI ESDMSTGSTF RAIDLSPGMM NKTMPFPVSL QPNFFASAQS TGTAAQLAPR 420 LPSDVANCAS QPQSVACHSG FFTTDGALPS EKLKEQDLTI EGGTISISSV YSQGLLNTLT 480 QALQTSGVDL SHASISVQIE LGKRSSSRPT ASTSTLKDRE APTANQGTTR SIVGCGEDSD 540 QPLKKLKT

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MELPQSRPFG AEGRKSTHDF LSLCSHSSAQ QDPRPPSQGK TSAKEETPVE VATAEKPPPP  60
APPSVEHILP GGIGTYSISH ISYFNPRVPK AEGAIYNVAQ GSSTERNDEN SNCSSYTGSG  120
FTLWEESAGK KGKIRKENAG ETPVVREAAG KVGQWATSSL ERASQSSTNN HRNSFSSLSS  180
SQPSSKRKSQ SFMEMIKSAK GSAQDDDFEE DEDFVFKKES STTTHSKGEL RVKVDGKTAP  240
DQKANTPRSK HSATEQRRRS KINDRFQMLR DLIPHSDQKR DKASFLLEVI EYIQFLQEKV  300
HKYEGTYQGW SCEPSKLMPW RNNHRPTENY ADQSRAINDV SAPALVFSAK FDERNITVAP  360
TIPGSAQKPI ESDMSTGSTF RAIDLSPGMM NKTMPFPVSL QPNFFASAQS TGTAAQLAPR  420
LPSDVANCAS QPQSVACHSG FFTTDGALPS EKLKEQDLTI EGGTISISSV YSQGLLNTLT  480
QALQTSGVDL SHASISVQIE LGKRSSSRPT ASTSTLKDRE APTANQGTTR SIVGCGEDSD  540
QPLKKLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-111	bHLH family protein