PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286615.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 563aa MW: 61359.1 Da PI: 8.1451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8.2e-18	263	312	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_021286615.1 263 RSKHSATEQRRRSKINDRFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 312 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MELPQSRPFG AEGRKSTHDF LSLCSHSSAQ QDPRPPSQGG YLKTHDFLQL ERLGKTSAKE 60 ETPVEVATAE KPPPPAPPSV EHILPGGIGT YSISHISYFN PRVPKAEGAI YNVAQGSSTE 120 RNDENSNCSS YTGSGFTLWE ESAGKKGKIR KENAGETPVV REAAGKVGQW ATSSLERASQ 180 SSTNNHRNSF SSLSSSQPSS KRKSQSFMEM IKSAKGSAQD DDFEEDEDFV FKKESSTTTH 240 SKGELRVKVD GKTAPDQKAN TPRSKHSATE QRRRSKINDR FQMLRDLIPH SDQKRDKASF 300 LLEVIEYIQF LQEKVHKYEG TYQGWSCEPS KLMPWRNNHR PTENYADQSR AINDVSAPAL 360 VFSAKFDERN ITVAPTIPGS AQKPIESDMS TGSTFRAIDL SPGMMNKTMP FPVSLQPNFF 420 ASAQSTGTAA QLAPRLPSDV ANCASQPQSV ACHSGFFTTD GALPSEKLKE QDLTIEGGTI 480 SISSVYSQGL LNTLTQALQT SGVDLSHASI SVQIELGKRS SSRPTASTST LKDREAPTAN 540 QGTTRSIVGC GEDSDQPLKK LKT

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MELPQSRPFG AEGRKSTHDF LSLCSHSSAQ QDPRPPSQGG YLKTHDFLQL ERLGKTSAKE  60
ETPVEVATAE KPPPPAPPSV EHILPGGIGT YSISHISYFN PRVPKAEGAI YNVAQGSSTE  120
RNDENSNCSS YTGSGFTLWE ESAGKKGKIR KENAGETPVV REAAGKVGQW ATSSLERASQ  180
SSTNNHRNSF SSLSSSQPSS KRKSQSFMEM IKSAKGSAQD DDFEEDEDFV FKKESSTTTH  240
SKGELRVKVD GKTAPDQKAN TPRSKHSATE QRRRSKINDR FQMLRDLIPH SDQKRDKASF  300
LLEVIEYIQF LQEKVHKYEG TYQGWSCEPS KLMPWRNNHR PTENYADQSR AINDVSAPAL  360
VFSAKFDERN ITVAPTIPGS AQKPIESDMS TGSTFRAIDL SPGMMNKTMP FPVSLQPNFF  420
ASAQSTGTAA QLAPRLPSDV ANCASQPQSV ACHSGFFTTD GALPSEKLKE QDLTIEGGTI  480
SISSVYSQGL LNTLTQALQT SGVDLSHASI SVQIELGKRS SSRPTASTST LKDREAPTAN  540
QGTTRSIVGC GEDSDQPLKK LKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-120	bHLH family protein