PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286449.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 515aa MW: 57593.7 Da PI: 4.0838

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	256	304	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++W++eE++l+ ++v + W++ a+ ++ Rt ++++s+++++ XP_021286449.1 256 MKWSEEEEQLFHKVVFSNPASlgrnFWDSLASVFP-YRTKEDIVSYYFNV 304 79***********8777667777******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MVHKRPFVEE DTFEVSNKQS RQVERSNILV LSSESFLPED DSLISNASGE DRFINANTEC 60 DEKLANAIDT KHPGKAEDFE ANVPSCIAMS SLGTCSTGEE DSWPEEPLHM PSFAECFHPE 120 RQVRTFARWD DIYSILLECP PRKQVLVGPK YQADIPEWDS QVARNTSNDT DASETAADRY 180 ENKLMGTCII PMPALESSAD DDKVGSGRSD CSCEDKDSVR CVRQHIMEAR EELRKSLGHE 240 KFVELGFCDM GELVTMKWSE EEEQLFHKVV FSNPASLGRN FWDSLASVFP YRTKEDIVSY 300 YFNVFMLRKR SEQNRCESMS INSDNDEWQG TDDSGNDEVG FSDEDEDSVI ESPICQEDFD 360 NHRSQEAGLC VFDEDIADET CDNHSIDFGS GGNATKVSET YSEKLFSNCG SDPPAQLHGK 420 TLKDARGEQE EQEVQDDSCT SSDTGAASHE TPVNADNADQ WQSNLNGLNN GGSHGYVLEP 480 CDTKVWDAGY PTCQKNKIDF LPTCSMIEEV FGDGS

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MVHKRPFVEE DTFEVSNKQS RQVERSNILV LSSESFLPED DSLISNASGE DRFINANTEC  60
DEKLANAIDT KHPGKAEDFE ANVPSCIAMS SLGTCSTGEE DSWPEEPLHM PSFAECFHPE  120
RQVRTFARWD DIYSILLECP PRKQVLVGPK YQADIPEWDS QVARNTSNDT DASETAADRY  180
ENKLMGTCII PMPALESSAD DDKVGSGRSD CSCEDKDSVR CVRQHIMEAR EELRKSLGHE  240
KFVELGFCDM GELVTMKWSE EEEQLFHKVV FSNPASLGRN FWDSLASVFP YRTKEDIVSY  300
YFNVFMLRKR SEQNRCESMS INSDNDEWQG TDDSGNDEVG FSDEDEDSVI ESPICQEDFD  360
NHRSQEAGLC VFDEDIADET CDNHSIDFGS GGNATKVSET YSEKLFSNCG SDPPAQLHGK  420
TLKDARGEQE EQEVQDDSCT SSDTGAASHE TPVNADNADQ WQSNLNGLNN GGSHGYVLEP  480
CDTKVWDAGY PTCQKNKIDF LPTCSMIEEV FGDGS