PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286293.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 372aa MW: 41149.9 Da PI: 10.2031

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.2e-15	142	187	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ +++ + ++lG+g+W+ I++++ ++Rt+ q+ s+ qky XP_021286293.1 142 KPWTEEEHRIFLAGLRKLGKGDWRGISKKFVTTRTPTQVASHAQKY 187 58*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MKGRESLVYQ REKQGFEFNI YIYIYIYECV CYKPNKVPAP KRGIEGVERM VKETGRKCSH 60 CGHNGHNSRT CHGKGCVKLF GVNISAVEKQ GSFMKKSFSM ESLRSHHAEY DNNAPSVDDG 120 YLSDGQIHSR KSNAARGRKR GKPWTEEEHR IFLAGLRKLG KGDWRGISKK FVTTRTPTQV 180 ASHAQKYFLR QAGNDKKKRR PSLFDMAFQQ LESNASPPDS PAKETTRDSC DQVKAPSQIV 240 NRFPHLCLDD GAVTSLTASH GFPTYYHRIQ PVAGGAPNGQ GFPKAKMMPS LPFLHAMNYA 300 GLHYGYMAKA LGCAPAAHPS GIPSPWSVQH RMLRAGPGAS PAEKDLLELK IGPPQSSKNT 360 SMPSQASSIS VI

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MKGRESLVYQ REKQGFEFNI YIYIYIYECV CYKPNKVPAP KRGIEGVERM VKETGRKCSH  60
CGHNGHNSRT CHGKGCVKLF GVNISAVEKQ GSFMKKSFSM ESLRSHHAEY DNNAPSVDDG  120
YLSDGQIHSR KSNAARGRKR GKPWTEEEHR IFLAGLRKLG KGDWRGISKK FVTTRTPTQV  180
ASHAQKYFLR QAGNDKKKRR PSLFDMAFQQ LESNASPPDS PAKETTRDSC DQVKAPSQIV  240
NRFPHLCLDD GAVTSLTASH GFPTYYHRIQ PVAGGAPNGQ GFPKAKMMPS LPFLHAMNYA  300
GLHYGYMAKA LGCAPAAHPS GIPSPWSVQH RMLRAGPGAS PAEKDLLELK IGPPQSSKNT  360
SMPSQASSIS VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	200	KKKRR
2	196	201	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	3e-66	MYB_related family protein