PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286200.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 316aa MW: 35641.8 Da PI: 5.3679

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.2e-24	38	126	1	80
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+ +Li+a+ +e+r r+++ +++p+W++vs++++++g+ r+p+qC+++w+nl +++kkik++e+ +++++s + XP_021286200.1 38 RWTRQETIVLIQAKLAVENRARARSipfsifssdQNEPKWDSVSSYCKQHGVGREPVQCQKRWSNLLGDFKKIKTWESHIKEGAESFWT 126 8*******************876666666667******************************************99887776665 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MTGLDSINMQ ENASSKLDEA KEQSFYAPDS KKNTRHTRWT RQETIVLIQA KLAVENRARA 60 RSIPFSIFSS DQNEPKWDSV SSYCKQHGVG REPVQCQKRW SNLLGDFKKI KTWESHIKEG 120 AESFWTMRSN SRRERKLPGL FDREVYDILD GREFPMAATP LAHVTAMTEI DSSSVDQVAM 180 AAATAEEEQK NEDEEADEEI GLENDKETIA MRSPAKTDGN LSPISGEAKE KDPGSTAGTG 240 SMIQKGLKRR RLSIDGSEDI NWAKVLERSS NMLSSQLESQ NINYQLDRDQ RKEQADSLVA 300 ALNKLTDVLL RIVNKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	252	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-70	Trihelix family protein